Created
December 4, 2020 11:16
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Configuration file to execute SITS R Package with multiple vegetation index bands
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| default: | |
| # estimated relative growth size of R memory relative to block size | |
| R_memory_bloat : 4 | |
| R_processing_bloat : 5 | |
| # minimum number of samples for multicore processing | |
| minimum_number_samples : 1000 | |
| # Data cube types known to sits | |
| cube_types : ["WTSS", "SATVEG", "RASTER", "BDC_TILE", "BDC_STAC", "S2_L2A_AWS", "PROBS", "CLASSIFIED"] | |
| cube_classes_generic : ["wtss_cube", "satveg_cube", "raster_cube", "raster_cube", "raster_cube", "raster_cube", "probs_cube", "classified_image"] | |
| cube_classes_specific : ["wtss_cube", "satveg_cube", "raster_cube", "bdc_cube", "bdc_stac", "s2_l2a_aws_cube", "probs_cube", "classified_image"] | |
| cube_robjs : ["no_raster", "no_raster", "raster", "raster", "raster", "raster", "raster", "raster"] | |
| cube_services : ["WTSS", "SATVEG"] | |
| cube_raster : ["RASTER", "BDC_TILE", "BDC_STAC", "S2_L2A_AWS", "PROBS", "CLASSIFIED"] | |
| # BDC configuration for access to data | |
| bdc_web : "http://brazildatacube.dpi.inpe.br/Repository/Mosaic/" | |
| bdc_stac : "http://brazildatacube.dpi.inpe.br/stac/" | |
| bdc_local : "/gfs/Repository/Mosaic" | |
| bdc_extension : ["tif"] | |
| # information to parse repositories | |
| BDC_TILE : | |
| data_dir_path : ["cube", "version", "tile"] | |
| parse_info : ["sat", "res", "X1", "X2", "X3", "tile", "date", "X4", "band"] | |
| delim : ["_"] | |
| RASTER : | |
| data_dir_path : ["."] | |
| parse_info : ["band", "date"] | |
| delim : ["_"] | |
| # URL to access SATVEG | |
| SATVEG-EMBRAPA_server : "https://www.satveg.cnptia.embrapa.br/satvegws/ws/perfil/ZW46IXzr4pRzJlX/" | |
| SATVEG_EMBRAPA_test : "https://www.satveg.cnptia.embrapa.br/satvegws/ws/perfil/ZW46IXzr4pRzJlX/ndvi/ponto/-55.50563/-11.71557/terra/1//" | |
| SATVEG-EMBRAPA_cubes : ["terra", "aqua", "comb"] | |
| supported_satellites : ["TERRA", "AQUA", "LANDSAT-8", "LANDSAT-7", "LANDSAT-5", "SENTINEL-2", "CBERS-4"] | |
| supported_sensors : ["MODIS", "OLI", "ETM", "TM", "MSI", "AWFI"] | |
| MODIS_sensors : ["MODIS"] | |
| TERRA_sensors : ["MODIS"] | |
| LANDSAT-8_sensors : ["OLI"] | |
| LANDSAT-7_sensors : ["ETM"] | |
| LANDSAT-5_sensors : ["TM"] | |
| SENTINEL-2_sensors : ["MSI"] | |
| CBERS-4_sensors : ["AWFI"] | |
| MODIS : | |
| bands : | |
| SITS : ["BLUE", "RED", "NIR", "MIR"] | |
| missing_value : | |
| NDVI : -3000 | |
| EVI : -3000 | |
| BLUE : -1000 | |
| RED : -1000 | |
| NIR : -1000 | |
| MIR : -1000 | |
| SAVI : -9999 | |
| NDMI : -9999 | |
| GEMI : -9999 | |
| minimum_value : | |
| NDVI : -3000 | |
| EVI : -3000 | |
| BLUE : 0 | |
| RED : 0 | |
| NIR : 0 | |
| MIR : 0 | |
| SAVI : -10000 | |
| NDMI : -10000 | |
| GEMI : -10000 | |
| maximum_value : | |
| NDVI : 10000 | |
| EVI : 10000 | |
| BLUE : 10000 | |
| RED : 10000 | |
| NIR : 10000 | |
| MIR : 10000 | |
| SAVI : 10000 | |
| NDMI : 10000 | |
| GEMI : 10000 | |
| scale_factor : | |
| NDVI : 0.0001 | |
| EVI : 0.0001 | |
| BLUE : 0.0001 | |
| RED : 0.0001 | |
| NIR : 0.0001 | |
| MIR : 0.0001 | |
| SAVI : 0.0001 | |
| NDMI : 0.0001 | |
| GEMI : 0.0001 | |
| resolution : | |
| xres : 0.00208334 | |
| yres : 0.00208334 | |
| OLI : &landsat | |
| bands : | |
| SITS : &oli_bands_sits ["B2", "B3", "B4", "B5", "B6", "B7", "NDVI", "EVI"] | |
| BDC_TILE : ["band2", "band3", "band4", "band5", "band6", "band7", "ndvi", "evi"] | |
| RASTER : *oli_bands_sits | |
| missing_value : | |
| NDVI : -9999 | |
| EVI : -9999 | |
| B2 : -9999 | |
| B3 : -9999 | |
| B4 : -9999 | |
| B5 : -9999 | |
| B6 : -9999 | |
| B7 : -9999 | |
| minimum_value : | |
| NDVI : -3000 | |
| EVI : -3000 | |
| B2 : 0 | |
| B3 : 0 | |
| B4 : 0 | |
| B5 : 0 | |
| B6 : 0 | |
| B7 : 0 | |
| maximum_value : | |
| NDVI : 10000 | |
| EVI : 10000 | |
| B2 : 10000 | |
| B3 : 10000 | |
| B4 : 10000 | |
| B5 : 10000 | |
| B6 : 10000 | |
| B7 : 10000 | |
| scale_factor: | |
| NDVI : 0.0001 | |
| EVI : 0.0001 | |
| B2 : 0.0001 | |
| B3 : 0.0001 | |
| B4 : 0.0001 | |
| B5 : 0.0001 | |
| B6 : 0.0001 | |
| B7 : 0.0001 | |
| resolution : | |
| xres : 30 | |
| yres : 30 | |
| TM : *landsat | |
| ETM : *landsat | |
| AWFI : | |
| bands : | |
| SITS : &awfi_bands_sits ["B13", "B14", "B15", "B16", "NDVI", "EVI", "CMASK", "GEMI", "GNDVI", "NDWI2", "PVR"] | |
| BDC_TILE : ["BAND13", "BAND14", "BAND15", "BAND16", "NDVI", "EVI", "CMASK", "GEMI", "GNDVI", "NDWI2", "PVR"] | |
| RASTER : *awfi_bands_sits | |
| cloud_band : "CMASK" | |
| missing_value : | |
| GEMI : -9999 | |
| GNDVI : -9999 | |
| NDWI2 : -9999 | |
| PVR : -9999 | |
| NDVI : -9999 | |
| EVI : -9999 | |
| B13 : -9999 | |
| B14 : -9999 | |
| B15 : -9999 | |
| B16 : -9999 | |
| CMASK : 255 | |
| minimum_value : | |
| GEMI : -10000 | |
| GNDVI : -10000 | |
| NDWI2 : -10000 | |
| PVR : -10000 | |
| NDVI : -10000 | |
| EVI : -10000 | |
| B13 : 1 | |
| B14 : 1 | |
| B15 : 1 | |
| B16 : 1 | |
| CMASK : 0 | |
| maximum_value : | |
| GEMI : 10000 | |
| GNDVI : 10000 | |
| NDWI2 : 10000 | |
| PVR : 10000 | |
| NDVI : 10000 | |
| EVI : 10000 | |
| B13 : 10000 | |
| B14 : 10000 | |
| B15 : 10000 | |
| B16 : 10000 | |
| CMASK : 4 | |
| scale_factor: | |
| GEMI : 0.0001 | |
| GNDVI : 0.0001 | |
| NDWI2 : 0.0001 | |
| PVR : 0.0001 | |
| NDVI : 0.0001 | |
| EVI : 0.0001 | |
| B13 : 0.0001 | |
| B14 : 0.0001 | |
| B15 : 0.0001 | |
| B16 : 0.0001 | |
| CMASK : 1 | |
| resolution : | |
| xres : 64 | |
| yres : 64 | |
| CMASK_values : | |
| no_clouds : 0 | |
| clouds : 4 | |
| MSI : | |
| bands : | |
| SITS : &msi_bands_sits ["B01", "B02", "B03", "B04", "B05", "B06", "B07", "B08", "B8A", "B09", "B10", "B11", "B12", "SCL"] | |
| S2_L2_AWS : &msi_bands_aws ["B01", "B02", "B03", "B04", "B05", "B06", "B07", "B08", "B8A", "B09", "B10", "B11", "B12", "SCL"] | |
| BDC_TILE : ["band1", "band2", "band3", "band4", "band5", "band6", "band7", "band8", "band8a", "band9", "band10", "band11", "band12"] | |
| RASTER : *msi_bands_sits | |
| AWS : *msi_bands_aws | |
| cloud_band : "SCL" | |
| SCL_values : | |
| 0 : "missing_data" | |
| 1 : "defective pixel" | |
| 2 : "shadows" | |
| 3 : "cloud shadows" | |
| 4 : "vegetation" | |
| 5 : "non-vegetated" | |
| 6 : "water" | |
| 7 : "unclassified" | |
| 8 : "cloud medium" | |
| 9 : "cloud high" | |
| 10 : "thin cirrus" | |
| 11 : "snow or ice" | |
| FMASK_values : | |
| 0 : "clear land pixel" | |
| 1 : "clear water pixel" | |
| 2 : "cloud shadow" | |
| 3 : "snow" | |
| 4 : "cloud" | |
| 255 : "no observation" | |
| missing_value : | |
| NDVI : -9999 | |
| EVI : -9999 | |
| SAVI : -9999 | |
| NDMI : -9999 | |
| B01 : -9999 | |
| B02 : -9999 | |
| B03 : -9999 | |
| B04 : -9999 | |
| B05 : -9999 | |
| B06 : -9999 | |
| B07 : -9999 | |
| B08 : -9999 | |
| B8A : -9999 | |
| B09 : -9999 | |
| B10 : -9999 | |
| B11 : -9999 | |
| B12 : -9999 | |
| SCL : 0 | |
| minimum_value : | |
| EVI : -9999 | |
| SAVI : -9999 | |
| NDVI : -9999 | |
| NDMI : -9999 | |
| B01 : 0 | |
| B02 : 0 | |
| B03 : 0 | |
| B04 : 0 | |
| B05 : 0 | |
| B06 : 0 | |
| B07 : 0 | |
| B08 : 0 | |
| B8A : 0 | |
| B09 : 0 | |
| B10 : 0 | |
| B11 : 0 | |
| B12 : 0 | |
| SCL : 0 | |
| maximum_value : | |
| EVI : 10000 | |
| SAVI : 10000 | |
| NDVI : 10000 | |
| NDMI : 10000 | |
| B01 : 10000 | |
| B02 : 10000 | |
| B03 : 10000 | |
| B04 : 10000 | |
| B05 : 10000 | |
| B06 : 10000 | |
| B07 : 10000 | |
| B08 : 10000 | |
| B8A : 10000 | |
| B09 : 10000 | |
| B10 : 10000 | |
| B11 : 10000 | |
| B12 : 10000 | |
| SCL : 1 | |
| scale_factor: | |
| EVI : 0.0001 | |
| SAVI : 0.0001 | |
| NDVI : 0.0001 | |
| NDMI : 0.0001 | |
| B01 : 0.0001 | |
| B02 : 0.0001 | |
| B03 : 0.0001 | |
| B04 : 0.0001 | |
| B05 : 0.0001 | |
| B06 : 0.0001 | |
| B07 : 0.0001 | |
| B08 : 0.0001 | |
| B8A : 0.0001 | |
| B09 : 0.0001 | |
| B10 : 0.0001 | |
| B11 : 0.0001 | |
| B12 : 0.0001 | |
| SCL : 1 | |
| resolution : | |
| xres : 10 | |
| yres : 10 | |
| S2_L2A_AWS : &sentinel | |
| bucket : "sentinel-s2-l2a" | |
| resolutions : ["10m", "20m", "60m"] | |
| 10m_bands : ["B02", "B03", "B04", "B08"] | |
| 20m_bands : ["B02", "B03", "B04", "B05", "B06", "BO7", "B08", "B8A", "B11", "B12", "SCL"] | |
| 60m_bands : ["B01", "B02", "B03", "B04", "B05", "B06", "BO7", "B08", "B8A", "B09", "B10", "B11", "B12", "SCL"] | |
| test_file : "/vsis3/sentinel-s2-l2a/tiles/20/L/KP/2018/8/17/0/R20m/B02.jp2" | |
| CLOUD : | |
| BDC_TILE : | |
| AWFI_CLD_BAND : "CMASK" | |
| AWFI_cld_vls : 4 | |
| MSI_CLD_BAND : "FMASK" | |
| MSI_cld_vls : [2, 3, 4, 255] | |
| BDC_STAC : | |
| AWFI_CLD_BAND : "CMASK" | |
| AWFI_cld_vls : 4 | |
| MSI_CLD_BAND : "FMASK" | |
| MSI_cld_vls : [2, 3, 4, 255] | |
| S2_L2A_AWS : | |
| MSI_CLD_BAND : "SCL" | |
| MSI_cld_vls : [0, 1, 2, 3, 7, 8, 9, 10, 11] | |
| RASTER : | |
| AWFI_CLD_BAND : "CMASK" | |
| AWFI_cld_vls : 4 | |
| MSI_CLD_BAND : "SCL" | |
| MSI_cld_vls : [0, 1, 2, 3, 7, 8, 9, 10, 11] | |
| MODIS_CLD_BAND : "pixel reliability" | |
| MODIS_cld_vls : [2,3] | |
| SATVEG_bands : | |
| terra : &bands-sv ["NDVI", "EVI"] | |
| aqua : *bands-sv | |
| comb : *bands-sv | |
| SATVEG_bbox : | |
| terra : | |
| xmin : &xmin_satveg -81.2341 | |
| xmax : &xmax_satveg -31.9165 | |
| ymin : &ymin_satveg -30.0000 | |
| ymax : &ymax_satveg 10.000 | |
| aqua : | |
| xmin : *xmin_satveg | |
| xmax : *xmax_satveg | |
| ymin : *ymin_satveg | |
| ymax : *ymax_satveg | |
| comb : | |
| xmin : *xmin_satveg | |
| xmax : *xmax_satveg | |
| ymin : *ymin_satveg | |
| ymax : *ymax_satveg | |
| SATVEG_size : | |
| terra : | |
| nrows : &nrows_satveg 24000 | |
| ncols : &ncols_satveg 19200 | |
| aqua : | |
| nrows : *nrows_satveg | |
| ncols : *ncols_satveg | |
| comb : | |
| nrows : *nrows_satveg | |
| ncols : *ncols_satveg | |
| SATVEG_prefilter : | |
| terra : &prefilter ["0", "1", "2", "3"] # "0" - none, "1" - no data correction, "2" - cloud correction, "3" - no data and cloud correction | |
| aqua : *prefilter | |
| comb : *prefilter | |
| SATVEG_crs : | |
| terra : &crs-wgs84 "+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs" | |
| aqua : *crs-wgs84 | |
| comb : *crs-wgs84 | |
| colors: | |
| Araguaia : "palegreen3" | |
| Beans : "lightskyblue3" | |
| Campo_Cerrado : "darkseagreen3" | |
| Cerradao : "forestgreen" | |
| Cerrado : "palegreen4" | |
| Cerrado_Rupestre : "lightgreen" | |
| Corn : "burlywood3" | |
| Cotton: "wheat2" | |
| Cropland: "orange4" | |
| Dunas : "honeydew3" | |
| Deforestation: "darkred" | |
| Deforestatio: "darkred" | |
| Fallow_Cotton : "wheat2" | |
| Millet_Cotton : "wheat4" | |
| Forest : "darkgreen" | |
| Pasture : "lightsteelblue2" | |
| NonForest: "lightsteelblue2" | |
| Soy_Corn : "orange2" | |
| Soy_Cotton : "orangered4" | |
| Soy_Fallow : "orange4" | |
| Soy_Sorghum: "darkorange3" | |
| Soy_Millet : "darkorange" | |
| Soy_Sunflower : "darkorange4" | |
| Sugarcane : "gold4" | |
| Urban_Area : "ivory4" | |
| Water : "royalblue3" | |
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