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October 3, 2021 09:27
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NLMIXED in R
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try.nlm2<-nlme(y~U+D*exp(-(Kd*x)), | |
data=Grass_compl, | |
fixed=U+D+Kd~1, | |
random=U+D+Kd~1|Trial/Cow, | |
start=c(U=20,D=50.88,Kd=0.02698), | |
method="ML", | |
control=nlmeControl(maxIter=1000, msMaxIter = 100)) | |
try.nlm3<-nlme(y~U+D*exp(-(Kd*x)), | |
data=Grass_compl, | |
fixed=U+D+Kd~1, | |
random=U+D+Kd~1|Trial/Cow/Replicate, | |
start=c(U=20,D=50.88,Kd=0.02698), | |
method="ML", | |
control=nlmeControl(maxIter=1000, msMaxIter = 100)) # Can't run, singular precision matrices | |
try.nlm4<-nlme(y~U+D*exp(-(Kd*x)), | |
data=Grass_compl, | |
fixed=U+D+Kd~1, | |
random=U+D+Kd~1|id, | |
start=c(U=20,D=50.88,Kd=0.02698), | |
method="ML", | |
control=nlmeControl(maxIter=1000, msMaxIter = 100)) | |
try.nlm5<-nlme(y~U+D*exp(-(Kd*x)), | |
data=Grass_compl, | |
fixed=U+D+Kd~1, | |
random=U+D+Kd~1|Cow, | |
start=c(U=20,D=50.88,Kd=0.02698), | |
method="ML", | |
control=nlmeControl(maxIter=1000, msMaxIter = 100)) | |
nlm<-nlme(y~U+D*exp(-(Kd*x)), | |
data=Grass_new, | |
fixed=U+D+Kd~1, | |
random=U+D+Kd~1, | |
start=c(U=20,D=50.88,Kd=0.02698), | |
method="ML", | |
control=nlmeControl(maxIter=1000000, msMaxIter = 1000)) | |
nlm_auto<-nlme(y~U+D*exp(-(Kd*x)), | |
data=Grass_new, | |
fixed=U+D+Kd~1, | |
random=U+D+Kd~1, | |
start=c(U=20,D=50.88,Kd=0.02698), | |
correlation = corARMA(c(-0.4,-0.2,0.3), p=0, q=3, form=~1|id), | |
method="ML", | |
control=nlmeControl(maxIter=1000000, msMaxIter = 1000)) | |
# Compare Nested Models | |
anova(try.nlm1, try.nlm2) | |
anova(try.nlm1,try.nlm5,try.nlm4) |
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