MartGro

Aligning > 1MB long sequences (e.g. long DNA sequences) can take quite long with Needleman Wunsch

An alternative is using the BWA:
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool/Day1/Sequence%20Alignment_July2015_ShamithSamarajiwa.pdf

#1 Create index:
../bwa-0.7.17/bwa index -p index_path -a bwtsw dna_reference.fasta 


./bwa-0.7.17/bwa mem -t 16 index_path dna_of_interest.fasta | ./samtools-1.16.1/samtools sort -o output.bam -

MartGro

# This relies on the read-roi library from here: https://github.com/hadim/read-roi
# Additionally, it requires shapely for the polygons 
# And ray for parallelizing

from read_roi import read_roi_zip
import glob

#find all roi zip files
all_zip_path = glob.glob("your_folder/*.zip")

MartGro

1) Download FlatCAM_beta_8.994_sources

2) Python 3.8

3) Manually install gdal from conda

4) Bug fixes: 
- Vector bug fix

MartGro

Übersicht: https://alte-gemuesesorten-erhalten.de/unsere-sorten/bezugsquellen/

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Online-Shop der Samenbau Nordost Kooperative (https://samenbau-nordost.de/shop/?orderby=popularity) (Saatgut von den Betrieben Keimzelle, Landwirtschaftsbetrieb Johannishöhe, Saatgut- und Permakulturgarten Alt-Rosenthal, Saatguterhaltung & Jungpflanzen Albrecht Vetters, Samenbau Grete Peschken)

Online-Shop vom VERN e.V. (https://vern.de/bestellung/saatgut-bestellung) (Saatgut aus dem Erhaltungsgarten des VERN sowie von den Mitgliedsbetrieben Keimzelle, Landwirtschaftsbetrieb Johannishöhe, Saatgut- und Permakulturgarten Alt-Rosenthal, deinHof e.V., Gärtnerei Apfeltraum, Samenbau und Blumen Alexandra Becker)

Online-Shop von Dreschflegel (https://www.dreschflegel-shop.de/) (Saatgut von Samenbau Grete Peschken, Sonnensamen – Saatzucht Marcus Ströhla und weiteren 22 Betrieben)

Online-Shop vom Bio-Lieferservice „Der Landkorb“ (Saatgut vom Betrieb Keimzelle)

MartGro

A collection of useful tools for simulating solar power installations with python

PVLIB:

https://github.com/pvlib/pvlib-python https://pvlib-python.readthedocs.io/en/stable/index.html

pvlib python is a community supported tool that provides a set of functions and classes for simulating the performance of photovoltaic energy systems. pvlib python was originally ported from the PVLIB MATLAB toolbox developed at Sandia National Laboratories and it implements many of the models and methods developed at the Labs. More information on Sandia Labs PV performance modeling programs can be found at the PVPMC. We collaborate with the PVLIB MATLAB project, but operate independently of it.

Prosumpy

https://github.com/energy-modelling-toolkit/prosumpy

MartGro

MartGro

{ head -n1 unsorted.csv && tail -n+2 unsorted.csv | sort -n --field-separator="," -k 1,1; } > sorted.csv; 

MartGro

cpanm (App::cpanminus) 1.7044 on perl 5.030003 built for x86_64-linux
Work directory is /home/stud/ga42vor/.cpanm/work/1591284564.30315
You have make /usr/bin/make
You have LWP 6.44
You have /bin/tar: tar (GNU tar) 1.29
Copyright © 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

MartGro

cpanm (App::cpanminus) 1.7044 on perl 5.030003 built for x86_64-linux
Work directory is /home/stud/ga42vor/.cpanm/work/1591284525.30081
You have make /usr/bin/make
You have LWP 6.44
You have /bin/tar: tar (GNU tar) 1.29
Copyright © 2015 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

MartGro

import itertools

def listen_permutator(a,b):
    comb = itertools.product(a,b)
    comb = [flatten([j for j in i]) for i in comb]
    #print(list(comb))
    comb = set(tuple(sorted(i)) for i in comb if len(i) == len(set(i)))
    return [list(i) for i in comb]

def flatten(l):