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January 12, 2017 13:22
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New Rakudo REPL with slanged multiline quote constructor for arrays of bio-sequence objects. Example takes copy pasted FASTA formatted sequence data between ` ` and creates an array of sequence objects. Translated into amino acids we get the PERL peptide ;3 For the code that generates the slang please see https://github.com/MattOates/BioInfo/blo…
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| $ perl6 -MBioInfo | |
| To exit type 'exit' or '^D' | |
| > my @dna = ` | |
| * >id comment | |
| * CCCGAACGGCTT | |
| * `; | |
| [>id comment | |
| CCCGAACGGCTT | |
| ] | |
| > @dna[0].translate | |
| >id comment | |
| PERL | |
| > +@dna[0] | |
| 12 | |
| > @dna[0].six-frame-translate | |
| [>id/+1 comment | |
| PERL | |
| >id/+2 comment | |
| PNG | |
| >id/+3 comment | |
| RTA | |
| >id/-1 comment | |
| KPFG | |
| >id/-2 comment | |
| SRS | |
| >id/-3 comment | |
| AVR | |
| ] |
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