Micket · May 9, 2025 16:03
diff --git a/CrystFEL-0.11.1-foss-2024a_partial.log b/CrystFEL-0.11.1-foss-2024a_partial.log
 	/lib64/ld-linux-x86-64.so.2 (0x00007f0d229ec000)

 == 2025-05-09 16:03:39,932 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libpinkIndexer.so
 == 2025-05-09 16:03:39,932 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libpinkIndexer.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-ldqsgqur
 == 2025-05-09 16:03:39,932 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libpinkIndexer.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-ldqsgqur/out.txt
 == 2025-05-09 16:03:39,973 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:39,973 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libpinkIndexer.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,013 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x33cd0 contains 30 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libstdc++.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libgcc_s.so.1]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libpinkIndexer.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0xd000
 0x000000000000000d (FINI)               0x2ebdc
 0x0000000000000019 (INIT_ARRAY)         0x34b48
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x34b50
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0xb58
 0x0000000000000005 (STRTAB)             0x3278
 0x0000000000000006 (SYMTAB)             0x1340
 0x000000000000000a (STRSZ)              30568 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x34fe8
 0x0000000000000002 (PLTRELSZ)           4056 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0xb490
 0x0000000000000007 (RELA)               0xada0
 0x0000000000000008 (RELASZ)             1776 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0xac80
 0x000000006fffffff (VERNEEDNUM)         4
 0x000000006ffffff0 (VERSYM)             0xa9e0
 0x000000006ffffff9 (RELACOUNT)          3
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:40,014 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libpinkIndexer.so
 == 2025-05-09 16:03:40,014 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,014 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,052 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:40,053 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so
 == 2025-05-09 16:03:40,053 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,053 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,121 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007ffc82b6e000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007fd8147a3000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007fd814400000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007fd8148ca000)

 == 2025-05-09 16:03:40,121 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so
 == 2025-05-09 16:03:40,121 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-8tkh3y7e
 == 2025-05-09 16:03:40,121 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-8tkh3y7e/out.txt
 == 2025-05-09 16:03:40,167 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,167 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,204 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x36d18 contains 28 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libccp4c.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0xb000
 0x000000000000000d (FINI)               0x2bd98
 0x0000000000000019 (INIT_ARRAY)         0x377b0
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x377b8
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0xd98
 0x0000000000000005 (STRTAB)             0x46b0
 0x0000000000000006 (SYMTAB)             0x19f8
 0x000000000000000a (STRSZ)              14201 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x37fe8
 0x0000000000000002 (PLTRELSZ)           6552 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0x8f98
 0x0000000000000007 (RELA)               0x8278
 0x0000000000000008 (RELASZ)             3360 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0x81e8
 0x000000006fffffff (VERNEEDNUM)         2
 0x000000006ffffff0 (VERSYM)             0x7e2a
 0x000000006ffffff9 (RELACOUNT)          101
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:40,205 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libccp4c.so
 == 2025-05-09 16:03:40,205 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,205 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,241 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:40,241 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so
 == 2025-05-09 16:03:40,242 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,242 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,321 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007ffebbb3e000)
 	libstdc++.so.6 => /apps/Test/software/GCCcore/13.3.0/lib64/libstdc++.so.6 (0x00007f41e70b1000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007f41e6fcf000)
 	libgcc_s.so.1 => /apps/Test/software/GCCcore/13.3.0/lib64/libgcc_s.so.1 (0x00007f41e6fa9000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007f41e6c00000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007f41e733d000)

 == 2025-05-09 16:03:40,322 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so
 == 2025-05-09 16:03:40,322 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-qxadffry
 == 2025-05-09 16:03:40,322 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-qxadffry/out.txt
 == 2025-05-09 16:03:40,360 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,360 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,398 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x1bd80 contains 30 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libstdc++.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libgcc_s.so.1]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libfastDiffractionImageProcessing.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0x7000
 0x000000000000000d (FINI)               0x18bf4
 0x0000000000000019 (INIT_ARRAY)         0x1cd70
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x1cd78
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0x640
 0x0000000000000005 (STRTAB)             0x16d0
 0x0000000000000006 (SYMTAB)             0x9e0
 0x000000000000000a (STRSZ)              15922 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x1cfe8
 0x0000000000000002 (PLTRELSZ)           2184 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0x5810
 0x0000000000000007 (RELA)               0x56d8
 0x0000000000000008 (RELASZ)             312 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0x5618
 0x000000006fffffff (VERNEEDNUM)         4
 0x000000006ffffff0 (VERSYM)             0x5502
 0x000000006ffffff9 (RELACOUNT)          3
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:40,398 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libfastDiffractionImageProcessing.so
 == 2025-05-09 16:03:40,399 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,399 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libcrystfel.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,483 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libcrystfel.so: symbolic link to libcrystfel.so.18

 == 2025-05-09 16:03:40,483 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib/libcrystfel.so
 == 2025-05-09 16:03:40,512 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,512 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,556 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so: ELF 64-bit LSB shared object, x86-64, version 1 (GNU/Linux), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:40,556 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so
 == 2025-05-09 16:03:40,557 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,557 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,627 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007f55542ac000)
 	libstdc++.so.6 => /apps/Test/software/GCCcore/13.3.0/lib64/libstdc++.so.6 (0x00007f5553f99000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007f5553eb7000)
 	libgcc_s.so.1 => /apps/Test/software/GCCcore/13.3.0/lib64/libgcc_s.so.1 (0x00007f5553e91000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007f5553c00000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007f55542ae000)

 == 2025-05-09 16:03:40,627 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so
 == 2025-05-09 16:03:40,628 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-vybqi_om
 == 2025-05-09 16:03:40,628 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-vybqi_om/out.txt
 == 2025-05-09 16:03:40,665 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,665 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,708 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x9eca0 contains 30 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libstdc++.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libgcc_s.so.1]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libxgandalf.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0x1a000
 0x000000000000000d (FINI)               0x92ebc
 0x0000000000000019 (INIT_ARRAY)         0x9faa0
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x9faa8
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0x1388
 0x0000000000000005 (STRTAB)             0x5998
 0x0000000000000006 (SYMTAB)             0x2170
 0x000000000000000a (STRSZ)              67910 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x9ffe8
 0x0000000000000002 (PLTRELSZ)           9072 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0x17160
 0x0000000000000007 (RELA)               0x168c0
 0x0000000000000008 (RELASZ)             2208 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0x16790
 0x000000006fffffff (VERNEEDNUM)         4
 0x000000006ffffff0 (VERSYM)             0x162de
 0x000000006ffffff9 (RELACOUNT)          3
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:40,708 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libxgandalf.so
 == 2025-05-09 16:03:40,709 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,709 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,744 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:40,744 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18
 == 2025-05-09 16:03:40,745 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,745 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,849 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007ffe8c949000)
 	libxgandalf.so => /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/../lib64/libxgandalf.so (0x00007fe726771000)
 	libpinkIndexer.so => /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/../lib64/libpinkIndexer.so (0x00007fe72673b000)
 	libfastDiffractionImageProcessing.so => /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/../lib64/libfastDiffractionImageProcessing.so (0x00007fe72671d000)
 	libccp4c.so => /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/../lib64/libccp4c.so (0x00007fe7266e2000)
 	libfftw3.so.3 => /apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64/libfftw3.so.3 (0x00007fe72645b000)
 	libgsl.so.28 => /apps/Test/software/GSL/2.8-GCC-13.3.0/lib64/libgsl.so.28 (0x00007fe725fa4000)
 	libgslcblas.so.0 => /apps/Test/software/GSL/2.8-GCC-13.3.0/lib64/libgslcblas.so.0 (0x00007fe725ee8000)
 	libz.so.1 => /apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64/libz.so.1 (0x00007fe725ecd000)
 	libhdf5_hl.so.310 => /apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64/libhdf5_hl.so.310 (0x00007fe725ea8000)
 	libhdf5.so.310 => /apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64/libhdf5.so.310 (0x00007fe725a89000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007fe7259a7000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007fe725600000)
 	libstdc++.so.6 => /apps/Test/software/GCCcore/13.3.0/lib64/libstdc++.so.6 (0x00007fe72539e000)
 	libgcc_s.so.1 => /apps/Test/software/GCCcore/13.3.0/lib64/libgcc_s.so.1 (0x00007fe72597e000)
 	libsz.so.2 => /apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/libsz.so.2 (0x00007fe725962000)
 	libmpi.so.40 => /apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/libmpi.so.40 (0x00007fe72504c000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007fe72689a000)
 	libucc.so.1 => /apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib64/libucc.so.1 (0x00007fe725928000)
 	libopen-pal.so.80 => /apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/libopen-pal.so.80 (0x00007fe724f1b000)
 	libucp.so.0 => /apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib64/libucp.so.0 (0x00007fe725856000)
 	libuct.so.0 => /apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib64/libuct.so.0 (0x00007fe72581c000)
 	libucs.so.0 => /apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib64/libucs.so.0 (0x00007fe724ebb000)
 	libucm.so.0 => /apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib64/libucm.so.0 (0x00007fe724ea0000)
 	libbfd-2.42.so => /apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib64/libbfd-2.42.so (0x00007fe724d56000)
 	libzstd.so.1 => /apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64/libzstd.so.1 (0x00007fe724c95000)
 	libsframe.so.1 => /apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib64/libsframe.so.1 (0x00007fe725812000)
 	libpmix.so.2 => /apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib64/libpmix.so.2 (0x00007fe724a6a000)
 	libmunge.so.2 => /lib64/libmunge.so.2 (0x00007fe725809000)
 	libevent_core-2.1.so.7 => /apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib64/libevent_core-2.1.so.7 (0x00007fe724a33000)
 	libevent_pthreads-2.1.so.7 => /apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib64/libevent_pthreads-2.1.so.7 (0x00007fe724a2e000)
 	libhwloc.so.15 => /apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib64/libhwloc.so.15 (0x00007fe7249ca000)
 	libpciaccess.so.0 => /apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib64/libpciaccess.so.0 (0x00007fe7249be000)
 	libxml2.so.2 => /apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib64/libxml2.so.2 (0x00007fe724860000)
 	liblzma.so.5 => /apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib64/liblzma.so.5 (0x00007fe724832000)

 == 2025-05-09 16:03:40,850 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18
 == 2025-05-09 16:03:40,852 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-7y25s5vy
 == 2025-05-09 16:03:40,852 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-7y25s5vy/out.txt
 == 2025-05-09 16:03:40,891 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,891 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,930 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x76c78 contains 38 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libxgandalf.so]
 0x0000000000000001 (NEEDED)             Shared library: [libpinkIndexer.so]
 0x0000000000000001 (NEEDED)             Shared library: [libfastDiffractionImageProcessing.so]
 0x0000000000000001 (NEEDED)             Shared library: [libccp4c.so]
 0x0000000000000001 (NEEDED)             Shared library: [libfftw3.so.3]
 0x0000000000000001 (NEEDED)             Shared library: [libgsl.so.28]
 0x0000000000000001 (NEEDED)             Shared library: [libgslcblas.so.0]
 0x0000000000000001 (NEEDED)             Shared library: [libz.so.1]
 0x0000000000000001 (NEEDED)             Shared library: [libhdf5_hl.so.310]
 0x0000000000000001 (NEEDED)             Shared library: [libhdf5.so.310]
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libcrystfel.so.18]
 0x000000000000000f (RPATH)              Library rpath: [$ORIGIN/../lib64/:$ORIGIN/../lib:$ORIGIN:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0x13000
 0x000000000000000d (FINI)               0x5f48c
 0x0000000000000019 (INIT_ARRAY)         0x77c68
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x77c70
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0x16d8
 0x0000000000000005 (STRTAB)             0x75e8
 0x0000000000000006 (SYMTAB)             0x29f8
 0x000000000000000a (STRSZ)              20584 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x77fe8
 0x0000000000000002 (PLTRELSZ)           14280 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0xf5f8
 0x0000000000000007 (RELA)               0xcda8
 0x0000000000000008 (RELASZ)             10320 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0xcca8
 0x000000006fffffff (VERNEEDNUM)         3
 0x000000006ffffff0 (VERSYM)             0xc650
 0x000000006ffffff9 (RELACOUNT)          400
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:40,930 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so.18
 == 2025-05-09 16:03:40,931 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,931 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/pkgconfig' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:40,963 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/pkgconfig: setgid, directory

 == 2025-05-09 16:03:40,963 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/pkgconfig
 == 2025-05-09 16:03:40,964 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:40,964 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,000 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so: ELF 64-bit LSB shared object, x86-64, version 1 (GNU/Linux), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:41,000 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so
 == 2025-05-09 16:03:41,001 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,001 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,076 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007f0dfc2ec000)
 	libstdc++.so.6 => /apps/Test/software/GCCcore/13.3.0/lib64/libstdc++.so.6 (0x00007f0dfc044000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007f0dfbf62000)
 	libgcc_s.so.1 => /apps/Test/software/GCCcore/13.3.0/lib64/libgcc_s.so.1 (0x00007f0dfbf3c000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007f0dfbc00000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007f0dfc2ee000)

 == 2025-05-09 16:03:41,076 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so
 == 2025-05-09 16:03:41,076 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-fj6a1adj
 == 2025-05-09 16:03:41,077 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-fj6a1adj/out.txt
 == 2025-05-09 16:03:41,115 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,115 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,154 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x33cd0 contains 30 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libstdc++.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libgcc_s.so.1]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libpinkIndexer.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0xd000
 0x000000000000000d (FINI)               0x2ebdc
 0x0000000000000019 (INIT_ARRAY)         0x34b48
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x34b50
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0xb58
 0x0000000000000005 (STRTAB)             0x3278
 0x0000000000000006 (SYMTAB)             0x1340
 0x000000000000000a (STRSZ)              30568 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x34fe8
 0x0000000000000002 (PLTRELSZ)           4056 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0xb490
 0x0000000000000007 (RELA)               0xada0
 0x0000000000000008 (RELASZ)             1776 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0xac80
 0x000000006fffffff (VERNEEDNUM)         4
 0x000000006ffffff0 (VERSYM)             0xa9e0
 0x000000006ffffff9 (RELACOUNT)          3
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:41,154 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libpinkIndexer.so
 == 2025-05-09 16:03:41,155 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,155 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,189 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:41,190 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so
 == 2025-05-09 16:03:41,190 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,190 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,255 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007fd4236b1000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007fd423586000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007fd423200000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007fd4236b3000)

 == 2025-05-09 16:03:41,255 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so
 == 2025-05-09 16:03:41,256 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-i0_2twmi
 == 2025-05-09 16:03:41,256 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-i0_2twmi/out.txt
 == 2025-05-09 16:03:41,293 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,293 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,333 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x36d18 contains 28 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libccp4c.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib:/apps/Test/software/OpenSSL/3/lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib]
 0x000000000000000c (INIT)               0xb000
 0x000000000000000d (FINI)               0x2bd98
 0x0000000000000019 (INIT_ARRAY)         0x377b0
 0x000000000000001b (INIT_ARRAYSZ)       8 (bytes)
 0x000000000000001a (FINI_ARRAY)         0x377b8
 0x000000000000001c (FINI_ARRAYSZ)       8 (bytes)
 0x0000000000000004 (HASH)               0x200
 0x000000006ffffef5 (GNU_HASH)           0xd98
 0x0000000000000005 (STRTAB)             0x46b0
 0x0000000000000006 (SYMTAB)             0x19f8
 0x000000000000000a (STRSZ)              14201 (bytes)
 0x000000000000000b (SYMENT)             24 (bytes)
 0x0000000000000003 (PLTGOT)             0x37fe8
 0x0000000000000002 (PLTRELSZ)           6552 (bytes)
 0x0000000000000014 (PLTREL)             RELA
 0x0000000000000017 (JMPREL)             0x8f98
 0x0000000000000007 (RELA)               0x8278
 0x0000000000000008 (RELASZ)             3360 (bytes)
 0x0000000000000009 (RELAENT)            24 (bytes)
 0x000000006ffffffe (VERNEED)            0x81e8
 0x000000006fffffff (VERNEEDNUM)         2
 0x000000006ffffff0 (VERSYM)             0x7e2a
 0x000000006ffffff9 (RELACOUNT)          101
 0x0000000000000000 (NULL)               0x0

 == 2025-05-09 16:03:41,333 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libccp4c.so
 == 2025-05-09 16:03:41,334 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,334 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,369 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, with debug_info, not stripped

 == 2025-05-09 16:03:41,370 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so
 == 2025-05-09 16:03:41,370 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,370 run.py:500 INFO Running shell command 'ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,441 run.py:598 INFO Output of 'ldd ...' shell command (stdout + stderr):
 	linux-vdso.so.1 (0x00007ffecbdfb000)
 	libstdc++.so.6 => /apps/Test/software/GCCcore/13.3.0/lib64/libstdc++.so.6 (0x00007f21b994e000)
 	libm.so.6 => /lib64/libm.so.6 (0x00007f21b986c000)
 	libgcc_s.so.1 => /apps/Test/software/GCCcore/13.3.0/lib64/libgcc_s.so.1 (0x00007f21b9846000)
 	libc.so.6 => /lib64/libc.so.6 (0x00007f21b9600000)
 	/lib64/ld-linux-x86-64.so.2 (0x00007f21b9bda000)

 == 2025-05-09 16:03:41,441 run.py:601 INFO Shell command completed successfully (see output above): ldd /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so
 == 2025-05-09 16:03:41,442 run.py:452 INFO run_shell_cmd: command environment of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so" will be saved to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-y3cixzdx
 == 2025-05-09 16:03:41,442 run.py:455 INFO run_shell_cmd: Output of "readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so" will be logged to /dev/shm/eb-4sc49ysx/run-shell-cmd-output/readelf-y3cixzdx/out.txt
 == 2025-05-09 16:03:41,479 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,479 run.py:500 INFO Running shell command 'readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,519 run.py:598 INFO Output of 'readelf ...' shell command (stdout + stderr):

 Dynamic section at offset 0x1bd80 contains 30 entries:
  Tag        Type                         Name/Value
 0x0000000000000001 (NEEDED)             Shared library: [libstdc++.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libm.so.6]
 0x0000000000000001 (NEEDED)             Shared library: [libgcc_s.so.1]
 0x0000000000000001 (NEEDED)             Shared library: [libc.so.6]
 0x000000000000000e (SONAME)             Library soname: [libfastDiffractionImageProcessing.so]
 0x000000000000000f (RPATH)              Library rpath: [/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib:/apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64:$ORIGIN:$ORIGIN/../lib:$ORIGIN/../lib64:/apps/Test/software/zlib/1.3.1-GCCcore-13.3.0/lib64:/apps/Test/software/util-linux/2.40-GCCcore-13.3.0/lib64:/apps/Test/software/FFTW/3.3.10-GCC-13.3.0/lib64:/apps/Test/software/Gdk-Pixbuf/2.42.11-GCCcore-13.3.0/lib64:/apps/Test/software/cairo/1.18.0-GCCcore-13.3.0/lib64:/apps/Test/software/GTK3/3.24.42-GCCcore-13.3.0/lib64:/apps/Test/software/GLib/2.80.4-GCCcore-13.3.0/lib64:/apps/Test/software/ncurses/6.5-GCCcore-13.3.0/lib64:/apps/Test/software/LibTIFF/4.6.0-GCCcore-13.3.0/lib64:/apps/Test/software/GSL/2.8-GCC-13.3.0/lib64:/apps/Test/software/HDF5/1.14.5-gompi-2024a/lib64:/apps/Test/software/pkgconf/2.2.0-GCCcore-13.3.0/lib64:/apps/Test/software/Meson/1.4.0-GCCcore-13.3.0/lib64:/apps/Test/software/ScaLAPACK/2.2.0-gompi-2024a-fb/lib64:/apps/Test/software/FlexiBLAS/3.4.4-GCC-13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib64:/apps/Test/software/GCCcore/13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib/../lib64:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-atk/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/at-spi2-core/2.54.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/X11/20240607-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/fontconfig/2.15.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/freetype/2.13.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Brotli/1.1.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpng/1.6.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/DBus/1.15.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/expat/2.6.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/ATK/2.38.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PCRE2/10.43-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/gettext/0.22.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libiconv/1.17-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libdeflate/1.20-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/zstd/1.5.6-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/lz4/1.9.4-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/jbigkit/2.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libjpeg-turbo/3.0.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Szip/2.1.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Python/3.12.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib64/../lib64:/apps/Test/software/SQLite/3.45.3-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/Tcl/8.6.14-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libreadline/8.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/bzip2/1.0.8-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/FFTW.MPI/3.3.10-gompi-2024a/lib/../lib64:/apps/Test/software/OpenBLAS/0.3.27-GCC-13.3.0/lib/../lib64:/apps/Test/software/OpenMPI/5.0.3-GCC-13.3.0/lib/../lib64:/apps/Test/software/UCC/1.3.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PRRTE/3.0.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/PMIx/5.0.2-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/UCX/1.16.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libevent/2.1.12-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/OpenSSL/3/lib64/../lib64:/apps/Test/software/hwloc/2.10.0-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libpciaccess/0.18.1-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/libxml2/2.12.7-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/XZ/5.4.5-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/numactl/2.0.18-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/binutils/2.42-GCCcore-13.3.0/lib/../lib64:/apps/Test/software/GCCcore/13.3.0/lib/gcc/x86_64-pc-linux-gnu/13.3.0:/apps/Test/software/libffi/3.4.5-GCCcore-13.3.0/lib:/apps/Test/software/pixman/0.43.4-GCCcore-13.3.0/lib:/apps/Test/software/libepoxy/1.5.10-GCCcore-13.3.0/lib:/apps/Test/software/Mesa/24.1.3-GCCcore-13.3.0/lib:/apps/Test/software/Wayland/1.23.0-GCCcore-13.3.0/lib:/apps/Test/software/LLVM/18.1.8-GCCcore-13.3.0-minimal/lib:/apps/Test/software/libunwind/1.8.1-GCCcore-13.3.0/lib:/apps/Test/software/libglvnd/1.7.0-GCCcore-13.3.0/lib:/apps/Test/software/libdrm/2.4.122-GCCcore-13.3.0/lib:/apps/Test/software/Pango/1.54.0-GCCcore-13.3.0/lib:/apps/Test/software/FriBidi/1.0.15-GCCcore-13.3.0/lib:/apps/Test/software/HarfBuzz/9.0.0-GCCcore-13.3.0/lib:/apps/Test/software/ICU/75.1-GCCcore-13.3.0/lib:/apps/Test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 == 2025-05-09 16:03:41,519 run.py:601 INFO Shell command completed successfully (see output above): readelf -d /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libfastDiffractionImageProcessing.so
 == 2025-05-09 16:03:41,519 run.py:489 INFO Path to bash that will be used to run shell commands: /usr/bin/bash
 == 2025-05-09 16:03:41,520 run.py:500 INFO Running shell command 'file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so' in /dev/shm/CrystFEL/0.11.1/foss-2024a/easybuild_obj
 == 2025-05-09 16:03:41,553 run.py:598 INFO Output of 'file ...' shell command (stdout + stderr):
 /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so: symbolic link to libcrystfel.so.18

 == 2025-05-09 16:03:41,554 run.py:601 INFO Shell command completed successfully (see output above): file /apps/Test/software/CrystFEL/0.11.1-foss-2024a/lib64/libcrystfel.so
 == 2025-05-09 16:03:41,591 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/base/exceptions.py:126 in __init__): Sanity check failed: no file found at 'bin/geoptimiser' in /apps/Test/software/CrystFEL/0.11.1-foss-2024a
 no file found at 'bin/hdfsee' in /apps/Test/software/CrystFEL/0.11.1-foss-2024a
 no file found at 'bin/partial_sim' in /apps/Test/software/CrystFEL/0.11.1-foss-2024a
 no file found at 'bin/pattern_sim' in /apps/Test/software/CrystFEL/0.11.1-foss-2024a
 no (non-empty) directory found at 'share/doc/crystfel/scripts/' in /apps/Test/software/CrystFEL/0.11.1-foss-2024a (at easybuild/framework/easyblock.py:3943 in _sanity_check_step)
 == 2025-05-09 16:03:41,591 build_log.py:322 INFO ... (took 13 secs)
 == 2025-05-09 16:03:41,591 filetools.py:2092 INFO Removing lock /apps/Test/software/.locks/_apps_Test_software_CrystFEL_0.11.1-foss-2024a.lock...
 == 2025-05-09 16:03:41,597 filetools.py:402 INFO Path /apps/Test/software/.locks/_apps_Test_software_CrystFEL_0.11.1-foss-2024a.lock successfully removed.
 == 2025-05-09 16:03:41,597 filetools.py:2096 INFO Lock removed: /apps/Test/software/.locks/_apps_Test_software_CrystFEL_0.11.1-foss-2024a.lock
 == 2025-05-09 16:03:41,597 easyblock.py:357 INFO Closing log for application name CrystFEL version 0.11.1