Get gene info for zebrafish genes

get_gene_info.R

# C.Savonen 
# ALSF for CCDL 
# 2019

# Purpose: Get gene info for Zebrafish/Human genes
# Replace 'Hs' with 'Dr' etc

columns(org.Hs.eg.db::org.Hs.eg.db)

# Get ensembl genes
genes <- AnnotationDbi::keys(org.Hs.eg.db::org.Hs.eg.db, "ENSEMBL")

# Retrieve transcripts for those
gene_info <- AnnotationDbi::select(org.Hs.eg.db::org.Hs.eg.db, keys = genes, 
                                   columns = c("ONTOLOGY", "GO"),
                                   keytype = "ENSEMBL")

# Write to tsv file
readr::write_tsv(gene_info, "human_genes_info.tsv", col_names = FALSE)

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