The Gibbs sampler discussed on Darren Wilkinson's blog and also on Dirk Eddelbuettel's blog has been implemented in several languages, the first of which was R.
The task is to create a Gibbs sampler for the unscaled density
f(x,y) = x x^2 \exp(-xy^2 - y^2 + 2y - 4x)
using the conditional distributions
x|y \sim Gamma(3, y^2 +4)
y|x \sim Normal(\frac{1}{1+x}, \frac{1}{2(1+x)})
SAM and BAM filtering one-liners
@author: David Fredman, [email protected] (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/
Please extend with additional/faster/better solutions via a pull request!
BWA mapping (using piping for minimal disk I/O)
| These code snippets have been tested on R 3.1.0 and Mac OS 10.9.3. They presumably do *not* work on R 2.X! | |
| ## Enter these commands in the Mac OS Terminal | |
| # use faster vecLib library | |
| cd /Library/Frameworks/R.framework/Resources/lib | |
| ln -sf /System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/libBLAS.dylib libRblas.dylib | |
| # return to default settings | |
| cd /Library/Frameworks/R.framework/Resources/lib |
| # Download Kallisto and sratools (the latter to be able to download from SRA) | |
| wget https://github.com/pachterlab/kallisto/releases/download/v0.42.3/kallisto_mac-v0.42.3.tar.gz | |
| tar zvxf kallisto_mac-v0.42.3.tar.gz | |
| wget http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.5.2/sratoolkit.2.5.2-mac64.tar.gz | |
| tar zxvf sratoolkit.2.5.2-mac64.tar.gz | |
| # Download and merge human cDNA and ncDNA files from Ensembl for the index. | |
| wget ftp://ftp.ensembl.org/pub/current_fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz | |
| wget ftp://ftp.ensembl.org/pub/current_fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz | |
| cat Homo_sapiens.GRCh38.cdna.all.fa.gz Homo_sapiens.GRCh38.ncrna.fa.gz > Homo_sapiens.GRCh38.rna.fa.gz |
翻译信息 原文：https://www.nginx.com/resources/wiki/extending/converting/ 时间：2016年02月17日 译者：@Undirectlookable
NGINX 从 1.9.11 版本起，引入了一个新的模块加载方式：动态加载。这意味着模块可以根据配置文件，在 NGINX 运行时动态的加载。同样，也可以通过修改配置文件然后 Reload NGINX 来卸载模块。
模块API对于静态模块和动态模块是一致的，但是 config 文件和编译方法略微不同。这篇文章将解释这些变化。
| FROM alpine:3.3 | |
| MAINTAINER Didiet Noor <[email protected]> (@lynxluna) | |
| # Patch APK Mirror to YKode | |
| RUN echo "http://dl-4.alpinelinux.org/alpine/v3.3/main" > /etc/apk/repositories | |
| ENV TIMEZONE Asia/Shanghai | |
| ENV PHP_MEMORY_LIMIT 512M | |
| ENV MAX_UPLOAD 50M |
| # Tested on GCE Debian 8 | |
| git clone --depth=1 --branch=v4.9 https://github.com/torvalds/linux.git | |
| cd linux | |
| curl https://raw.githubusercontent.com/google/bbr/master/Documentation/config.gce > .config | |
| # Edit .config by yourself, set CONFIG_TCP_CONG_CDG=y | |
| vi .config | |
| git apply tcp_cdg.patch | |
| # or git apply tcp_bugs.patch | |
| make deb-pkg |
| library(limma) | |
| library(tidyverse) | |
| dge <- DGEList(counts(sce_de)) | |
| dge <- calcNormFactors(dge) | |
| design <- model.matrix(~ (dbz_cluster_str == "Unknown"), colData(sce_de)) # Your design matrix here | |
| v <- voom(dge, design, plot = TRUE) |
| <html> | |
| <pre id='log'></pre> | |
| <script src="mojo_bindings.js"></script> | |
| <script src="third_party/blink/public/mojom/blob/blob_registry.mojom.js"></script> | |
| <script src="being_creator_interface.mojom.js"></script> | |
| <script src="food_interface.mojom.js"></script> | |
| <script src="dog_interface.mojom.js"></script> | |
| <script src="person_interface.mojom.js"></script> | |
| <script src="cat_interface.mojom.js"></script> | |
| <script> |
| #!/usr/bin/python3 | |
| # -*- coding: utf-8 -*- | |
| # -1. 感谢tongyifan，本脚本由他的qBittorrent版本修改而来，项目地址 https://gist.github.com/tongyifan/83220b417cffdd23528860ee0c518d15 | |
| # 0. 免责：仅在本人的Transmission v2.94上测试通过，本人不承担任何责任 | |
| # 1. 安装依赖： pip3 install requests transmissionrpc | |
| # 2. 修改代码开头的apikey和transmission_config | |
| # 3. 运行： python3 u2_update.py | |
| # 4. 中间有报错就再运行，直到显示找到0个未被更新的种子为止 | |
| # 5. 请勿手动中断脚本运行！ |