| # -*- encoding: utf-8 -*- | |
| # Author: Epix | |
| # | |
| # Ban Xunlei IP for deluge | |
| # This script will check deluge connected peers per 30 seconds. | |
| # When an IP with UA in `BAN_PATTERNS` is found, the IP will be added to `BLOCK_LIST_FILE`. | |
| # However if the IP is uploading or reporting 100% progress, it will say "WTF?" | |
| import logging |
SAM and BAM filtering one-liners
@author: David Fredman, [email protected] (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/
Please extend with additional/faster/better solutions via a pull request!
BWA mapping (using piping for minimal disk I/O)
| #!/bin/bash | |
| wkpath1=/home/path/to/clean | |
| wkpath2=/home/path/to/clean/bowtie2 | |
| bowtie2_index=/home/path/refgenome/grch38/grch38 | |
| ref=/home/path/blacklist/ENCFF356LFX.bed | |
| temp=/home/path/to/clean/temp | |
| for i in $(cat ${wkpath1}/sra.id) | |
| do | |
| sample_name=`basename $i` | |
| bowtie2 -p 6 --very-sensitive -X 2000 -x $bowtie2_index \ |
After Intel® Parallel® Studio XE 2020, you could use icx/icpx to enable intel compiler next generation code generator. It combined clang frontend and icc's cutting edge optimization, ideal for opensource projects which already supported opensource compilers.
After installed Parallel® Studio, setup compilation environment.
. /opt/intel/bin/compilervars.sh intel64
The Gibbs sampler discussed on Darren Wilkinson's blog and also on Dirk Eddelbuettel's blog has been implemented in several languages, the first of which was R.
This gist was written in purpose of demonstration only and may not exist without the help of @Ionizing.
The task is to create a Gibbs sampler for the unscaled density
f(x,y) = x x^2 \exp(-xy^2 - y^2 + 2y - 4x)
using the conditional distributions
| module TraceGraphs | |
| import TraceCalls: Trace | |
| import PlotRecipes: GraphPlot | |
| using RecipesBase | |
| type MyGraph | |
| source::AbstractVector{Int} | |
| destiny::AbstractVector{Int} | |
| end |
There is an increasing count of applications which use Authy for two-factor authentication. However many users who aren't using Authy, have their own authenticator setup up already and do not wish to use two applications for generating passwords.
Since I use 1Password for all of my password storing/generating needs, I was looking for a solution to use Authy passwords on that. I couldn't find any completely working solutions, however I stumbled upon a gist by Brian Hartvigsen. His post had a neat code with it to generate QR codes for you to use on your favorite authenticator.
His method is to extract the secret keys using Authy's Google Chrome app via Developer Tools. If this was not possible, I guess people would be reverse engineering the Android app or something like that. But when I tried that code, nothing appeared on the screen. My guess is that Brian used the
| #install homebrew | |
| /usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)" | |
| #install network ups tools | |
| brew update | |
| brew install nut | |
| #create directories and change permissions | |
| sudo mkdir -p /var/state/ups/upssched/ | |
| sudo chown -R `whoami`:nobody /var/state/ups | |
| sudo chmod 775 /var/state/ups/ |