MooxxNew

# original post: http://blog.hostonnet.com/uninstall-gui-from-ubuntu-14-04-lts
sudo apt-get purge -y lightdm
sudo shutdown -r now

sudo apt-get clean
sudo apt-get autoclean

apt-get purge -y unity*
sudo apt-get purge -y unity*
sudo apt-get purge -y gnome-*

MooxxNew

Set PRAGMA encoding =“UTF-8” for main database in sqlite

sqlite3 test.db

opens sqlite, nothing is written at that time

pragma encoding=utf8;

MooxxNew

#!/bin/sh
fdisk /dev/sda <<EOF
d
d
n
p
1

MooxxNew

#!/bin/sh
for i in $(seq 30 60);  do
echo "yes \n" | sshpass -p "password" ssh-copy-id  -i /home/ubuntu/.ssh/id_rsa.pub node-"$i"
done

MooxxNew

NAME="AiyaraOS"
VERSION="14.04.3 LTS, Trusty Tahr"
ID=aiyara
ID_LIKE=ubuntu
PRETTY_NAME="Ubuntu 14.04.3 LTS"
VERSION_ID="14.04"
HOME_URL="http://www.ubuntu.com/"
SUPPORT_URL="http://help.ubuntu.com/"
BUG_REPORT_URL="http://bugs.launchpad.net/ubuntu/"

MooxxNew

import org.apache.spark.{SparkConf, SparkContext}
/**
 * Created by Mooxx on 9/25/2015 AD.
 */
object TestPipe {
  def main(args: Array[String]) {
    val conf = new SparkConf().setMaster("local[*]").setAppName("Test Pipe")

    val sc = new SparkContext(conf)

MooxxNew

time{
import org.bdgenomics.adam.rdd.ADAMContext
import org.bdgenomics.adam.projections.{AlignmentRecordField, Projection}

val ac = new ADAMContext(sc)
val reads = ac.loadAlignments(
  "/home/deploy/data/HG00096.unmapped.ILLUMINA.bwa.GBR.low_coverage.20120522.adam",
  projection = Some(
    Projection(
      AlignmentRecordField.sequence,

MooxxNew

def time[T](block: => T): T = {
    val start = System.currentTimeMillis
    val res = block
    val totalTime = System.currentTimeMillis - start
    println("Elapsed time: %1d ms".format(totalTime))
    res
  }