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@NickSto
Last active January 31, 2020 20:52
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nCoV request
JSON:
curl 'https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/vvsearch2/' --data 'wt=json&indent=true&q=*:*&sort=&facet=on&facet.limit=500&facet.sort=index&fl=id,*_s,*_ss,*_sw,*_txt,*_i,*_csv,*_dt,*_dr&sord=asc&start=0&rows=200&facet.field=%7B!ex=SeqType_s%7DSeqType_s&facet.field=%7B!ex=Isolation_csv%7DIsolation_csv&facet.field=%7B!ex=Flags_csv%7DFlags_csv&facet.query=%7B!ex=EnvSample_s%20key=EnvSample_only%7DEnvSample_s:*&facet.query=%7B!ex=EnvSample_s%20key=EnvSample_exclude%7DNOT%20EnvSample_s:*&facet.query=%7B!ex=LabHost_s%20key=LabHost_only%7DLabHost_s:*&facet.query=%7B!ex=LabHost_s%20key=LabHost_exclude%7DNOT%20LabHost_s:*&facet.query=%7B!ex=VacStrain_s%20key=VacStrain_only%7DVacStrain_s:*&facet.query=%7B!ex=VacStrain_s%20key=VacStrain_exclude%7DNOT%20VacStrain_s:*&facet.pivot=%7B!ex=Region_s,Country_s%7DRegion_s,Country_s&&fq=VirusLineageId_ss:(2697049)&fq=%7B!tag=SeqType_s%7DSeqType_s:(%22Nucleotide%22)'
CSV:
curl 'https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/vvsearch2/?q=*:*&fq=VirusLineageId_ss:(2697049)&fq=%7B!tag=SeqType_s%7DSeqType_s:(%22Nucleotide%22)&cmd=download&sort=&dlfmt=csv&fl=Details:null,Accession:id,Release_Date:CreateDate_dt,Species:VirusSpecies_s,Genus:VirusGenus_s,Family:VirusFamily_s,Length:SLen_i,Nuc._Completeness:Flags_csv,Genotype:Serotype_s,Genome_Region:GenomeRegion_ss,Segment:Segment_s,Country:Country_s,Host:Host_s,Isolation_Source:Isolation_csv,Collection_Date:CollectionDate_s,BioSample:BioSample_s,GenBank_Title:Definition_s'
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