Created
December 15, 2016 19:05
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BCALM 2, git commit d47cf58 | |
setting storage type to hdf5 | |
bcalm_algo params, prefix:k21a10/SC8C1.bcalm.unitigs.fa k:21 a:10 minsize:10 threads:48 mintype:1 | |
DSK used 1 passes and 48 partitions | |
Iterated 339851 kmers, among them 69358 were doubled | |
In this superbucket (containing 48 active minimizers), | |
sum of time spent in lambda's: 31223.5 msecs | |
longest lambda: 706.7 msecs | |
tot time of best scheduling of lambdas: 31223.5 msecs | |
best theoretical speedup: 44.2x | |
Done with partition 0 -- memory [current, maximum (maxRSS)]: [1239, 2932] MB | |
Iterated 58596 kmers, among them 19203 were doubled | |
Loaded 13025 doubled kmers for partition 1 | |
In this superbucket (containing 48 active minimizers), | |
sum of time spent in lambda's: 858.6 msecs | |
longest lambda: 52.9 msecs | |
tot time of best scheduling of lambdas: 858.6 msecs | |
best theoretical speedup: 16.2x | |
Done with partition 1 -- memory [current, maximum (maxRSS)]: [1825, 2932] MB | |
wtf? traveller kmer = CACCGCTGCTTCGCAAGCGGC, min_minimizer=216571 max_minimizer=1048575, repart(min_minimizer)=2, repart(max_minimizer)=1 |
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