Last active
May 21, 2024 12:39
-
-
Save NicoKiaru/00e700d38aee5bd2d188379315f14fcc to your computer and use it in GitHub Desktop.
A small gists that dumps Timestamps from a File using Bio-Formats
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#@File f | |
IFormatReader r = new ImageReader(); | |
IMetadata meta = MetadataTools.createOMEXMLMetadata(); | |
r.setMetadataStore(meta) | |
r.setId(f.getAbsolutePath()); | |
meta = (IMetadata) r.getMetadataStore(); // Retrieves the metadata object | |
int nImages = r.getSeriesCount(); // Number of images within the file | |
for (int iImage = 0; iImage<nImages; iImage++) { | |
r.setSeries(iImage); | |
int nPlanes = meta.getPlaneCount(iImage); // Number of Planes within the image | |
System.out.println("Image #"+iImage+" ["+meta.getImageName(iImage)+"] nPlanes="+nPlanes); | |
for (int iPlane = 0; iPlane <nPlanes;iPlane++) { | |
int[] zct = r.getZCTCoords(iPlane); | |
System.out.println("Plane C:"+zct[0]+" Z:"+zct[1]+" T:"+zct[2]); | |
System.out.println("Acquired at "+meta.getPlaneDeltaT(iImage,iPlane).toString()); | |
} | |
} | |
import loci.formats.IFormatReader; | |
import loci.formats.ImageReader; | |
import loci.formats.meta.IMetadata; | |
import loci.formats.MetadataTools; |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment