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@jlehtoma
jlehtoma / wms_proto.R
Created November 13, 2011 20:01
Prototype for accessing WMS from R
# Author: Joona Lehtomäki <[email protected]>
# Updated: 13.11.2011
# Version: 0.0.1
if (!require("rgdal")) {
install.packages("rgdal")
}
if (!require("raster")) {
install.packages("raster")
@hadley
hadley / curriculum.md
Created September 27, 2013 20:24
My first stab at a basic R programming curriculum. I think teaching just these topics without overall motivating examples would be extremely boring, but if you're a self-taught R user, this might be useful to help spot your gaps.

Notes:

  • I've tried to break up in to separate pieces, but it's not always possible: e.g. knowledge of data structures and subsetting are tidy intertwined.

  • Level of Bloom's taxonomy listed in square brackets, e.g. http://bit.ly/15gqPEx. Few categories currently assess components higher in the taxonomy.

Programming R curriculum

Data structures

#Title: An example of the correlation of x and y for various distributions of (x,y) pairs
#Tags: Mathematics; Statistics; Correlation
#Author: Denis Boigelot
#Packets needed : mvtnorm (rmvnorm), #RSVGTipsDevice (devSVGTips)
#How to use: output()
#
#This is an translated version in R of an Matematica 6 code by Imagecreator.
# from http://en.wikipedia.org/wiki/File:Correlation_examples2.svg
library(mvtnorm)
@benmarwick
benmarwick / docs-per-topic.rmd
Last active August 29, 2015 13:56
How to find the topic with the highest proportion in a set of documents (after a topic model has been generated with the R package mallet)
Which documents belong to each topic?
Documents don't belong to a single topic, there is a distribution of topics
over each document.
But we can Find the topic with the highest proportion for each document.
That top-ranking topic might be called the 'topic' for the document, but note
that all docs have all topics to varying proportions
Assume that we start with `topic_docs` from the output of the mallet package
@leeper
leeper / update_github.R
Last active February 2, 2021 22:56
Update packages if a newer version is available from GitHub
library('devtools')
library('utils')
library('httr')
update_github <-
function(ask = TRUE, ...){
installed <- installed.packages()
oldVersion <- installed[,'Version']
urls <- sapply(names(oldVersion), function(x){
d <- packageDescription(x)
@sckott
sckott / crossref_alm.md
Created February 24, 2014 17:15
Get alm data for DOIs via Crossref using the alm R package

load alm

library(alm)

Define vector of DOIs, and search

Remember to get your api key, pass it in in the key parameter. Notice that we are passing the base url for the Crossref API, whereas the default is for the PLOS url http://alm.plos.org/api/v3/articles

@benmarwick
benmarwick / tables.Rmd
Last active December 31, 2017 16:39
Methods for tables with rmarkdown
---
title: "A few methods for making tables in rmarkdown"
output: html_document
---
Updates:
Packages that have appeared since my original look into this, and seem great:
https://github.com/yihui/printr
@danlwarren
danlwarren / thin.max.R
Last active May 20, 2024 15:43
thin.max.R, a function for rarefying point data in any number of dimensions
# Function to rarefy point data in any number of dimensions. The goal here is to
# take a large data set and reduce it in size in such a way as to approximately maximize the
# difference between points. For instance, if you have 2000 points but suspect a lot of
# spatial autocorrelation between them, you can pass in your data frame, the names (or indices)
# of the lat/lon columns, and the number 200, and you get back 200 points from your original data
# set that are chosen to be as different from each other as possible given a randomly chosen
# starting point
# Input is:
#
@johnbaums
johnbaums / diverge0.R
Last active February 15, 2024 09:42
Plot a rasterVis::levelplot with a colour ramp diverging around zero
diverge0 <- function(p, ramp) {
# p: a trellis object resulting from rasterVis::levelplot
# ramp: the name of an RColorBrewer palette (as character), a character
# vector of colour names to interpolate, or a colorRampPalette.
require(RColorBrewer)
require(rasterVis)
if(length(ramp)==1 && is.character(ramp) && ramp %in%
row.names(brewer.pal.info)) {
ramp <- suppressWarnings(colorRampPalette(brewer.pal(11, ramp)))
} else if(length(ramp) > 1 && is.character(ramp) && all(ramp %in% colors())) {
belief y2015 y2014
Improves the security posture of my organization 0.75 0.71
Improves the security posture of the nations critical infrastructure 0.63 0.64
Reduces the cost of detecting and preventing cyber attacks 0.22 0.21
Improves situational awareness 0.60 0.54
Fosters collaboration among peers and industry groups 0.48 0.51
Enhances the timeliness of threat data 0.11 0.16
Makes threat data more actionable 0.21 0.24