Created
January 4, 2014 05:51
-
-
Save benmarwick/8252193 to your computer and use it in GitHub Desktop.
Code for plotting correlation plots from http://www.sciencemag.org/content/334/6062/1518 and http://en.wikipedia.org/wiki/Pearson_product-moment_correlation_coefficient
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#Title: An example of the correlation of x and y for various distributions of (x,y) pairs | |
#Tags: Mathematics; Statistics; Correlation | |
#Author: Denis Boigelot | |
#Packets needed : mvtnorm (rmvnorm), #RSVGTipsDevice (devSVGTips) | |
#How to use: output() | |
# | |
#This is an translated version in R of an Matematica 6 code by Imagecreator. | |
# from http://en.wikipedia.org/wiki/File:Correlation_examples2.svg | |
library(mvtnorm) | |
library(RSVGTipsDevice) | |
MyPlot <- function(xy, xlim = c(-4, 4), ylim = c(-4, 4), eps = 1e-15) { | |
title = round(cor(xy[,1], xy[,2]), 1) | |
if (sd(xy[,2]) < eps) title = "" # corr. coeff. is undefined | |
plot(xy, main = title, xlab = "", ylab = "", | |
col = "darkblue", pch = 16, cex = 0.2, | |
xaxt = "n", yaxt = "n", bty = "n", | |
xlim = xlim, ylim = ylim) | |
} | |
MvNormal <- function(n = 1000, cor = 0.8) { | |
for (i in cor) { | |
sd = matrix(c(1, i, i, 1), ncol = 2) | |
x = rmvnorm(n, c(0, 0), sd) | |
MyPlot(x) | |
} | |
} | |
rotation <- function(t, X) return(X %*% matrix(c(cos(t), sin(t), -sin(t), cos(t)), ncol = 2)) | |
RotNormal <- function(n = 1000, t = pi/2) { | |
sd = matrix(c(1, 1, 1, 1), ncol = 2) | |
x = rmvnorm(n, c(0, 0), sd) | |
for (i in t) | |
MyPlot(rotation(i, x)) | |
} | |
Others <- function(n = 1000) { | |
x = runif(n, -1, 1) | |
y = 4 * (x^2 - 1/2)^2 + runif(n, -1, 1)/3 | |
MyPlot(cbind(x,y), xlim = c(-1, 1), ylim = c(-1/3, 1+1/3)) | |
y = runif(n, -1, 1) | |
xy = rotation(-pi/8, cbind(x,y)) | |
lim = sqrt(2+sqrt(2)) / sqrt(2) | |
MyPlot(xy, xlim = c(-lim, lim), ylim = c(-lim, lim)) | |
xy = rotation(-pi/8, xy) | |
MyPlot(xy, xlim = c(-sqrt(2), sqrt(2)), ylim = c(-sqrt(2), sqrt(2))) | |
y = 2*x^2 + runif(n, -1, 1) | |
MyPlot(cbind(x,y), xlim = c(-1, 1), ylim = c(-1, 3)) | |
y = (x^2 + runif(n, 0, 1/2)) * sample(seq(-1, 1, 2), n, replace = TRUE) | |
MyPlot(cbind(x,y), xlim = c(-1.5, 1.5), ylim = c(-1.5, 1.5)) | |
y = cos(x*pi) + rnorm(n, 0, 1/8) | |
x = sin(x*pi) + rnorm(n, 0, 1/8) | |
MyPlot(cbind(x,y), xlim = c(-1.5, 1.5), ylim = c(-1.5, 1.5)) | |
xy1 = rmvnorm(n/4, c( 3, 3)) | |
xy2 = rmvnorm(n/4, c(-3, 3)) | |
xy3 = rmvnorm(n/4, c(-3, -3)) | |
xy4 = rmvnorm(n/4, c( 3, -3)) | |
MyPlot(rbind(xy1, xy2, xy3, xy4), xlim = c(-3-4, 3+4), ylim = c(-3-4, 3+4)) | |
} | |
output <- function() { | |
# devSVGTips(width = 7, height = 3.2) # remove first and last line for no svg exporting | |
par(mfrow = c(3, 7), oma = c(0,0,0,0), mar=c(2,2,2,0)) | |
MvNormal(800, c(1.0, 0.8, 0.4, 0.0, -0.4, -0.8, -1.0)); | |
RotNormal(200, c(0, pi/12, pi/6, pi/4, pi/2-pi/6, pi/2-pi/12, pi/2)); | |
Others(800) | |
# dev.off() # remove first and last line for no svg exporting | |
} | |
output() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment