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September 24, 2015 06:58
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returns the first 8 trait values for any given species in EOL relying on the reol, traints and dplyr packages.
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get.eol.trait <- function(sp,trait) | |
{ | |
if (length(trait)==0) | |
{ | |
print("need trait") | |
stop() | |
} | |
library("reol"); library("traits"); library("dplyr") | |
pages<-DownloadSearchedTaxa(sp, to.file=F, MyKey=NULL, verbose=TRUE) | |
pages1<-as.numeric(gsub("eol","",colnames(as.data.frame(pages)))) | |
if (length(pages1)==0) | |
{ | |
return("NA") | |
} | |
else | |
{ | |
oid1<-traitbank(pages1) | |
oid2<-as.data.frame(oid1[2]) | |
oid3<-oid2[(oid2$graph.dwc.measurementtype.rdfs.label.en==trait)&!is.na(oid2$graph.dwc.measurementvalue),] | |
oid4<-data.frame | |
oid4<-c(oid3$graph.scientific.name[1],oid3$graph.dwc.measurementtype.rdfs.label.en[1],oid3$graph.dwc.measurementvalue[1:8]) | |
return(oid4) | |
} | |
} |
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