Ilya Flyamer Phlya
Phlya
/ plot_distiller_stats.py
Last active
January 4, 2022 16:30
Saves a few useful plots to visually check quality of Hi-C libraries based on *.stats files from distiller (pairtools stats output)
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| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| """ | |
| Created on Tue Sep 4 11:54:20 2018 | |
| @author: Ilya Flyamer | |
| """ | |
| import pandas as pd | |
| import numpy as np |
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| process{ | |
| // SGE node config | |
| executor = 'sge' | |
| penv = 'sharedmem' | |
| clusterOptions = '-l h_vmem=4G -V' | |
| time='12h' | |
| cpus = 1 | |
| maxRetries = 2 | |
| distillerTmpDir='/exports/eddie/scratch/ifliamer' |
Phlya
/ cooler balancing.ipynb
Last active
July 21, 2016 09:14
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