HJianBo
/ LC_CTYPE.txt
Created
November 7, 2017 02:02
— forked from jampajeen/LC_CTYPE.txt
Centos warning: setlocale: LC_CTYPE: cannot change locale (UTF-8): No such file or directory
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| vi /etc/environment | |
| add these lines... | |
| LANG=en_US.utf-8 | |
| LC_ALL=en_US.utf-8 |
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| # This is the source code of Albert Y. Kim (rudeboybert)'s "Introduction to | |
| # Splines" video. | |
| # Lines 4-86 were run before the video and hidden from the viewer in order to | |
| # simplify the content of the video. | |
| library(tidyverse) | |
| library(broom) | |
| # Set options, random number generator seed value, & ggplot geom() + theme() | |
| # arguments |
gireeshkbogu
/ convert_GTF_to_BED12.sh
Last active
February 10, 2025 10:25
How to convert GTF format into BED12 or BIGBED format?
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| # see below for UPDATES that include more shorter ways of conversions | |
| # How to convert GTF format into BED12 format (Human-hg19)? | |
| # How to convert GTF or BED format into BIGBED format? | |
| # Why BIGBED (If GTF or BED file is very large to upload in UCSC, you can use trackHubs. However trackHubs do not accept either of the formats. Therefore you would need bigBed format) | |
| # First, download UCSC scripts | |
| wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGenePred | |
| wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed | |
| wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed |