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ObsPy test warnings
======================================================================
ERROR: test_remove_polynomial_response (obspy.core.tests.test_trace.TraceTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/core/tests/test_trace.py", line 1662, in test_remove_polynomial_response
tr.remove_response()
File "<decorator-gen-39>", line 2, in remove_response
File "/home/elliott/code/obspy/obspy/core/trace.py", line 231, in _add_processing_info
result = func(*args, **kwargs)
File "/home/elliott/code/obspy/obspy/core/trace.py", line 2586, in remove_response
warnings.warn(msg % self.id)
UserWarning: Stage gain not defined for BK.CMB..LKS - setting it to 1.0
======================================================================
ERROR: test_taper_length (obspy.core.tests.test_trace.TraceTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/core/tests/test_trace.py", line 1352, in test_taper_length
tr.taper(max_percentage=0.7, max_length=int(npts / 2) + 1)
File "<decorator-gen-33>", line 2, in taper
File "/home/elliott/code/obspy/obspy/core/util/decorator.py", line 234, in skip_if_no_data
return func(*args, **kwargs)
File "<decorator-gen-32>", line 2, in taper
File "/home/elliott/code/obspy/obspy/core/trace.py", line 231, in _add_processing_info
result = func(*args, **kwargs)
File "/home/elliott/code/obspy/obspy/core/trace.py", line 2022, in taper
warnings.warn(msg)
UserWarning: The requested taper is longer than the trace. The taper will be shortened to trace length.
======================================================================
ERROR: test_taper_onesided (obspy.core.tests.test_trace.TraceTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/core/tests/test_trace.py", line 1335, in test_taper_onesided
tr.taper(max_percentage=None, side="left")
File "<decorator-gen-33>", line 2, in taper
File "/home/elliott/code/obspy/obspy/core/util/decorator.py", line 234, in skip_if_no_data
return func(*args, **kwargs)
File "<decorator-gen-32>", line 2, in taper
File "/home/elliott/code/obspy/obspy/core/trace.py", line 231, in _add_processing_info
result = func(*args, **kwargs)
File "/home/elliott/code/obspy/obspy/core/trace.py", line 2022, in taper
warnings.warn(msg)
UserWarning: The requested taper is longer than the trace. The taper will be shortened to trace length.
======================================================================
ERROR: test_issue_193 (obspy.core.tests.test_waveform_plugins.WaveformPluginsTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 494, in compile_sta2
stats['gse2']['lat'],
File "/home/elliott/code/obspy/obspy/core/util/attribdict.py", line 69, in __getitem__
return self.__dict__[name]
KeyError: 'lat'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/core/tests/test_waveform_plugins.py", line 312, in test_issue_193
tr.write(tempfile, format)
File "/home/elliott/code/obspy/obspy/core/trace.py", line 897, in write
Stream([self]).write(filename, format, **kwargs)
File "/home/elliott/code/obspy/obspy/core/stream.py", line 1444, in write
write_format(self, filename, **kwargs)
File "/home/elliott/code/obspy/obspy/io/gse2/core.py", line 115, in _write_gse2
libgse2.write(trace.stats, trace.data, f, inplace)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_read_and_write (obspy.core.tests.test_waveform_plugins.WaveformPluginsTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 494, in compile_sta2
stats['gse2']['lat'],
File "/home/elliott/code/obspy/obspy/core/util/attribdict.py", line 69, in __getitem__
return self.__dict__[name]
KeyError: 'lat'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/core/tests/test_waveform_plugins.py", line 89, in test_read_and_write
tr.write(outfile, format=format)
File "/home/elliott/code/obspy/obspy/core/trace.py", line 897, in write
Stream([self]).write(filename, format, **kwargs)
File "/home/elliott/code/obspy/obspy/core/stream.py", line 1444, in write
write_format(self, filename, **kwargs)
File "/home/elliott/code/obspy/obspy/io/gse2/core.py", line 115, in _write_gse2
libgse2.write(trace.stats, trace.data, f, inplace)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_read_thread_safe (obspy.core.tests.test_waveform_plugins.WaveformPluginsTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 494, in compile_sta2
stats['gse2']['lat'],
File "/home/elliott/code/obspy/obspy/core/util/attribdict.py", line 69, in __getitem__
return self.__dict__[name]
KeyError: 'lat'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/core/tests/test_waveform_plugins.py", line 243, in test_read_thread_safe
tr.write(outfile, format=format)
File "/home/elliott/code/obspy/obspy/core/trace.py", line 897, in write
Stream([self]).write(filename, format, **kwargs)
File "/home/elliott/code/obspy/obspy/core/stream.py", line 1444, in write
write_format(self, filename, **kwargs)
File "/home/elliott/code/obspy/obspy/io/gse2/core.py", line 115, in _write_gse2
libgse2.write(trace.stats, trace.data, f, inplace)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_bytes_io (obspy.io.gse2.tests.test_libgse2.LibGSE2TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 514, in compile_sta2
warnings.warn(msg)
UserWarning: Bad value in GSE2 'elev' header field detected. The last two header fields of the STA2 line in the output file will deviate from the official fixed column format description (because they can not be represented as '%f5.3' properly).
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/tests/test_libgse2.py", line 98, in test_bytes_io
libgse2.write(header, data, fout)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_parse_sta2 (obspy.io.gse2.tests.test_libgse2.LibGSE2TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/tests/test_libgse2.py", line 252, in test_parse_sta2
got = compile_sta2(header)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 514, in compile_sta2
warnings.warn(msg)
UserWarning: Bad value in GSE2 'elev' header field detected. The last two header fields of the STA2 line in the output file will deviate from the official fixed column format description (because they can not be represented as '%f5.3' properly).
======================================================================
ERROR: test_read_and_write (obspy.io.gse2.tests.test_libgse2.LibGSE2TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 514, in compile_sta2
warnings.warn(msg)
UserWarning: Bad value in GSE2 'elev' header field detected. The last two header fields of the STA2 line in the output file will deviate from the official fixed column format description (because they can not be represented as '%f5.3' properly).
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/tests/test_libgse2.py", line 79, in test_read_and_write
libgse2.write(header, data, f)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_read_and_write_streams_via_obspy (obspy.io.gse2.tests.test_core.CoreTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 514, in compile_sta2
warnings.warn(msg)
UserWarning: Bad value in GSE2 'elev' header field detected. The last two header fields of the STA2 line in the output file will deviate from the official fixed column format description (because they can not be represented as '%f5.3' properly).
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/tests/test_core.py", line 134, in test_read_and_write_streams_via_obspy
st1.write(tmpfile, format='GSE2')
File "/home/elliott/code/obspy/obspy/core/stream.py", line 1444, in write
write_format(self, filename, **kwargs)
File "/home/elliott/code/obspy/obspy/io/gse2/core.py", line 115, in _write_gse2
libgse2.write(trace.stats, trace.data, f, inplace)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_read_and_write_via_obspy (obspy.io.gse2.tests.test_core.CoreTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 514, in compile_sta2
warnings.warn(msg)
UserWarning: Bad value in GSE2 'elev' header field detected. The last two header fields of the STA2 line in the output file will deviate from the official fixed column format description (because they can not be represented as '%f5.3' properly).
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/tests/test_core.py", line 88, in test_read_and_write_via_obspy
st2.write(tempfile, format='GSE2')
File "/home/elliott/code/obspy/obspy/core/stream.py", line 1444, in write
write_format(self, filename, **kwargs)
File "/home/elliott/code/obspy/obspy/io/gse2/core.py", line 115, in _write_gse2
libgse2.write(trace.stats, trace.data, f, inplace)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_write_integers_via_obspy (obspy.io.gse2.tests.test_core.CoreTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 231, in write_header
sta2_line = compile_sta2(headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 494, in compile_sta2
stats['gse2']['lat'],
File "/home/elliott/code/obspy/obspy/core/util/attribdict.py", line 69, in __getitem__
return self.__dict__[name]
KeyError: 'lat'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/gse2/tests/test_core.py", line 164, in test_write_integers_via_obspy
st.write(tempfile, format="GSE2")
File "/home/elliott/code/obspy/obspy/core/stream.py", line 1444, in write
write_format(self, filename, **kwargs)
File "/home/elliott/code/obspy/obspy/io/gse2/core.py", line 115, in _write_gse2
libgse2.write(trace.stats, trace.data, f, inplace)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 410, in write
write_header(f, headdict)
File "/home/elliott/code/obspy/obspy/io/gse2/libgse2.py", line 234, in write_header
warnings.warn(msg)
UserWarning: GSE2: Error while compiling the STA2 header line, omitting it.
======================================================================
ERROR: test_creating_minimal_quakeml_with_mt (obspy.io.quakeml.tests.test_quakeml.QuakeMLTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/quakeml/tests/test_quakeml.py", line 737, in test_creating_minimal_quakeml_with_mt
new_cat = _read_quakeml(memfile)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 1782, in _read_quakeml
return Unpickler().load(filename)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 152, in load
return self._deserialize()
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 969, in _deserialize
fm = self._focal_mechanism(fm_el)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 874, in _focal_mechanism
obj.moment_tensor = self._moment_tensor(element)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 837, in _moment_tensor
obj.resource_id = mt_el.get('publicID')
File "/home/elliott/code/obspy/obspy/core/event/base.py", line 325, in __setattr__
self.resource_id.set_referred_object(self)
File "/home/elliott/code/obspy/obspy/core/event/base.py", line 590, in set_referred_object
inspect.currentframe().f_back.f_lineno)
UserWarning: The resource identifier 'smi:local/290126f2-bb01-4a70-b6ff-15b6c5a3391c' already exists and points to another object: 'MomentTensor(resource_id=ResourceIdentifier(id="smi:local/290126f2-bb01-4a70-b6ff-15b6c5a3391c"), derived_origin_id=ResourceIdentifier(id="smi:local/b3fbc8c9-5496-465f-9927-3263799f829a"), scalar_moment=5.291502622129181e+18, tensor=Tensor(m_rr=1e+18, m_tt=2e+18, m_pp=3e+18, m_rt=3e+18, m_rp=2e+18, m_tp=1e+18))'.It will now point to the object referred to by the new resource identifier.
======================================================================
ERROR: test_write_with_extra_tags_and_read (obspy.io.quakeml.tests.test_quakeml.QuakeMLTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/quakeml/tests/test_quakeml.py", line 927, in test_write_with_extra_tags_and_read
cat = _read_quakeml(tmpfile)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 1782, in _read_quakeml
return Unpickler().load(filename)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 152, in load
return self._deserialize()
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 959, in _deserialize
pick = self._pick(pick_el)
File "/home/elliott/code/obspy/obspy/io/quakeml/core.py", line 473, in _pick
obj.resource_id = element.get('publicID')
File "/home/elliott/code/obspy/obspy/core/event/base.py", line 325, in __setattr__
self.resource_id.set_referred_object(self)
File "/home/elliott/code/obspy/obspy/core/event/base.py", line 590, in set_referred_object
inspect.currentframe().f_back.f_lineno)
UserWarning: The resource identifier 'smi:local/f6b8b063-b183-49b1-9cf5-aef6873924f6' already exists and points to another object: 'Pick(resource_id=ResourceIdentifier(id="smi:local/f6b8b063-b183-49b1-9cf5-aef6873924f6"))'.It will now point to the object referred to by the new resource identifier.
======================================================================
ERROR: test_parse_file_with_no_default_namespace (obspy.io.stationxml.tests.test_stationxml.StationXMLTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/io/stationxml/tests/test_stationxml.py", line 632, in test_parse_file_with_no_default_namespace
inv = obspy.read_inventory(filename)
File "<decorator-gen-81>", line 2, in read_inventory
File "/home/elliott/code/obspy/obspy/core/util/decorator.py", line 289, in _map_example_filename
return func(*args, **kwargs)
File "/home/elliott/code/obspy/obspy/core/inventory/inventory.py", line 72, in read_inventory
format=format)[0]
File "/home/elliott/code/obspy/obspy/core/util/base.py", line 433, in _read_from_plugin
is_format = is_format(filename)
File "/home/elliott/code/obspy/obspy/io/stationxml/core.py", line 84, in _is_stationxml
root.attrib["schemaVersion"], SCHEMA_VERSION))
UserWarning: The StationXML file has version 2.0, ObsPy can deal with version 1.0. Proceed with caution.
======================================================================
ERROR: test_coincidence_trigger (obspy.signal.tests.test_trigger.TriggerTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/signal/tests/test_trigger.py", line 249, in test_coincidence_trigger
sta=0.3, lta=5)
File "/home/elliott/code/obspy/obspy/signal/trigger.py", line 669, in coincidence_trigger
warnings.warn(msg, UserWarning)
UserWarning: At least one trace's ID was not found in the trace ID list and was disregarded (BW.UH2..SHZ)
======================================================================
ERROR: test_issue1216 (obspy.signal.tests.test_spectral_estimation.PsdTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/obspy/obspy/signal/tests/test_spectral_estimation.py", line 586, in test_issue1216
ppsd.add(st)
File "/home/elliott/code/obspy/obspy/signal/spectral_estimation.py", line 813, in add
warnings.warn(msg)
UserWarning: Already covered time spans detected (e.g. 2011-03-31T00:00:00.180000Z), skipping these slices.
======================================================================
FAIL: getTravelTimes (obspy.taup.taup)
Doctest: obspy.taup.taup.getTravelTimes
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/elliott/code/conda/envs/obspy35/lib/python3.5/doctest.py", line 2189, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for obspy.taup.taup.getTravelTimes
File "/home/elliott/code/obspy/obspy/taup/taup.py", line 21, in getTravelTimes
----------------------------------------------------------------------
File "/home/elliott/code/obspy/obspy/taup/taup.py", line 43, in obspy.taup.taup.getTravelTimes
Failed example:
tt = getTravelTimes(delta=52.474, depth=611.0, model='ak135')
Exception raised:
Traceback (most recent call last):
File "/home/elliott/code/conda/envs/obspy35/lib/python3.5/doctest.py", line 1320, in __run
compileflags, 1), test.globs)
File "<doctest obspy.taup.taup.getTravelTimes[1]>", line 1, in <module>
tt = getTravelTimes(delta=52.474, depth=611.0, model='ak135')
File "/home/elliott/code/obspy/obspy/taup/taup.py", line 62, in getTravelTimes
ObsPyDeprecationWarning, stacklevel=2)
obspy.core.util.deprecation_helpers.ObsPyDeprecationWarning: The getTravelTimes() function is deprecated. Please use the obspy.taup.TauPyModel class directly.
----------------------------------------------------------------------
File "/home/elliott/code/obspy/obspy/taup/taup.py", line 44, in obspy.taup.taup.getTravelTimes
Failed example:
len(tt)
Exception raised:
Traceback (most recent call last):
File "/home/elliott/code/conda/envs/obspy35/lib/python3.5/doctest.py", line 1320, in __run
compileflags, 1), test.globs)
File "<doctest obspy.taup.taup.getTravelTimes[2]>", line 1, in <module>
len(tt)
NameError: name 'tt' is not defined
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