Set the mirror for R so it doesn't ask when installing packages, use stow to manage symlinks.

SetCranMirror.bas

#!/bin/bash
IFS="\n"

# Set Directories ............................................
DotFiles="~/DotFiles/"
R_DotFiles="${DotFiles}R/"

# Main Function.............................................
main() {
	## Make the directory
	mkdir -p "${R_DotFiles}"
	## Copy the config
	echo "${SetCranMirror}" > ~/DotFiles/R/.Rprofile
	## Use stow to do manage the symlinks
	cd "${DotFiles}"
	stow -S R -t "${HOME}" -d "${DotFiles}"
}

# Config String ............................................
SetCranMirror="
## Set CRAN Mirror:
local({
  r <- getOption("repos")
  r["CRAN"] <- "https://cloud.r-project.org/"
  options(repos = r)
})
"



# Do it ....................................................
main()