Created
June 16, 2020 15:37
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building the kraken2-microbial database
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| # kraken2-microbial database | |
| ## Monday 3rd September 2018 | |
| ## s.nicholls.1 | |
| KDB=$1 | |
| kraken2-build --download-taxonomy --threads 24 --db $KDB | |
| kraken2-build --download-library archaea --db $KDB | |
| kraken2-build --download-library bacteria --db $KDB | |
| kraken2-build --download-library fungi --db $KDB | |
| kraken2-build --download-library protozoa --db $KDB | |
| kraken2-build --download-library viral --db $KDB | |
| kraken2-build --download-library UniVec_Core --db $KDB | |
| kraken2-build --threads 24 --build --db $KDB | |
| bracken-build -x /home/ubuntu/git/kraken2/scripts/ -t 24 -l 2500 -d $KDB |
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