##GTR lset applyto=() nst=6 # GTR lset applyto=() nst=6 rates=propinv # GTR + I lset applyto=() nst=6 rates=gamma # GTR + gamma lset applyto=() nst=6 rates=invgamma # GTR + I + gamma
##SYM
lset applyto=() nst=6 # SYM
prset applyto=() statefreqpr=fixed(equal)