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April 18, 2017 17:51
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RStudio backtrace - Crash on file open.
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| RStudio Version: 1.0.136 | |
| > print(sessionInfo()) | |
| R version 3.3.3 (2017-03-06) | |
| Platform: x86_64-pc-linux-gnu (64-bit) | |
| Running under: Ubuntu 16.04.2 LTS | |
| locale: | |
| [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C | |
| [3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 | |
| [5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8 | |
| [7] LC_PAPER=en_CA.UTF-8 LC_NAME=C | |
| [9] LC_ADDRESS=C LC_TELEPHONE=C | |
| [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C | |
| attached base packages: | |
| [1] stats graphics grDevices utils datasets methods base | |
| > | |
| > | |
| /usr/bin/R | |
| Linux simon-K501UX 4.4.0-72-generic #93-Ubuntu SMP Fri Mar 31 14:07:41 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux | |
| GNU gdb (Ubuntu 7.11.1-0ubuntu1~16.04) 7.11.1 | |
| Copyright (C) 2016 Free Software Foundation, Inc. | |
| License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> | |
| This is free software: you are free to change and redistribute it. | |
| There is NO WARRANTY, to the extent permitted by law. Type "show copying" | |
| and "show warranty" for details. | |
| This GDB was configured as "x86_64-linux-gnu". | |
| Type "show configuration" for configuration details. | |
| For bug reporting instructions, please see: | |
| <http://www.gnu.org/software/gdb/bugs/>. | |
| Find the GDB manual and other documentation resources online at: | |
| <http://www.gnu.org/software/gdb/documentation/>. | |
| For help, type "help". | |
| Type "apropos word" to search for commands related to "word"... | |
| Reading symbols from /usr/lib/rstudio/bin/rsession...done. | |
| [New LWP 6923] | |
| [New LWP 6922] | |
| [New LWP 6931] | |
| [New LWP 6924] | |
| [New LWP 6932] | |
| [New LWP 6920] | |
| [Thread debugging using libthread_db enabled] | |
| Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1". | |
| Core was generated by `/usr/lib/rstudio/bin/rsession --config-file none --program-mode desktop --www-p'. | |
| Program terminated with signal SIGABRT, Aborted. | |
| #0 0x00007f5d03a5e428 in __GI_raise (sig=sig@entry=6) | |
| at ../sysdeps/unix/sysv/linux/raise.c:54 | |
| [Current thread is 1 (Thread 0x7f5d01da5700 (LWP 6923))] | |
| Thread 6 (Thread 0x7f5d058e1800 (LWP 6920)): | |
| #0 pthread_cond_timedwait@@GLIBC_2.3.2 () | |
| at ../sysdeps/unix/sysv/linux/x86_64/pthread_cond_timedwait.S:225 | |
| No locals. | |
| #1 0x00000000006c0789 in bool boost::condition_variable_any::do_timed_wait<boost::unique_lock<boost::mutex> >(boost::unique_lock<boost::mutex>&, timespec const&) () | |
| No symbol table info available. | |
| #2 0x00000000007669ba in rstudio::session::HttpConnectionQueue::waitForConnection(boost::posix_time::time_duration const&) () | |
| No symbol table info available. | |
| #3 0x0000000000766e63 in rstudio::session::HttpConnectionQueue::dequeConnection(boost::posix_time::time_duration const&) () | |
| No symbol table info available. | |
| #4 0x00000000006fddee in (anonymous namespace)::waitForMethod(std::string const&, boost::function<void ()> const&, boost::function<bool ()> const&, rstudio::core::json::JsonRpcRequest*) () | |
| No symbol table info available. | |
| #5 0x00000000006ffe9d in (anonymous namespace)::rConsoleRead(std::string const&, bool, rstudio::r::session::RConsoleInput*) () | |
| No symbol table info available. | |
| #6 0x0000000000d3e903 in rstudio::r::session::RReadConsole(char const*, unsigned char*, int, int) () | |
| No symbol table info available. | |
| #7 0x00007f5d05205afc in Rf_ReplIteration () from /usr/lib/R/lib/libR.so | |
| No symbol table info available. | |
| #8 0x00007f5d05205f61 in ?? () from /usr/lib/R/lib/libR.so | |
| No symbol table info available. | |
| #9 0x00007f5d05206018 in run_Rmainloop () from /usr/lib/R/lib/libR.so | |
| No symbol table info available. | |
| #10 0x0000000000d55e52 in rstudio::r::session::runEmbeddedR(rstudio::core::FilePath const&, rstudio::core::FilePath const&, bool, bool, SA_TYPE, rstudio::r::session::Callbacks const&, rstudio::r::session::InternalCallbacks*) () | |
| No symbol table info available. | |
| #11 0x0000000000d376dd in rstudio::r::session::run(rstudio::r::session::ROptions const&, rstudio::r::session::RCallbacks const&) () | |
| No symbol table info available. | |
| #12 0x000000000069fd39 in main () | |
| No symbol table info available. | |
| Thread 5 (Thread 0x7f5cf25bb700 (LWP 6932)): | |
| #0 0x00007f5d03b259e3 in select () at ../sysdeps/unix/syscall-template.S:84 | |
| No locals. | |
| #1 0x0000000000c9d556 in rstudio::core::system::(anonymous namespace)::standardStreamCaptureThread(int, boost::function<void (std::string const&)> const&, int, boost::function<void (std::string const&)> const&) () | |
| No symbol table info available. | |
| #2 0x0000000000de1578 in thread_proxy () | |
| No symbol table info available. | |
| #3 0x00007f5d04cbc6ba in start_thread (arg=0x7f5cf25bb700) | |
| at pthread_create.c:333 | |
| __res = <optimized out> | |
| pd = 0x7f5cf25bb700 | |
| now = <optimized out> | |
| unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140037179815680, | |
| 523711773644617196, 0, 140730816551503, 140037179816384, | |
| 140730816556272, -433051854351960596, -432749622600075796}, | |
| mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, | |
| data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}} | |
| not_first_call = <optimized out> | |
| pagesize_m1 = <optimized out> | |
| sp = <optimized out> | |
| freesize = <optimized out> | |
| __PRETTY_FUNCTION__ = "start_thread" | |
| #4 0x00007f5d03b2f82d in clone () | |
| at ../sysdeps/unix/sysv/linux/x86_64/clone.S:109 | |
| No locals. | |
| Thread 4 (Thread 0x7f5d015a4700 (LWP 6924)): | |
| #0 0x00007f5d03b2fe23 in epoll_wait () | |
| at ../sysdeps/unix/syscall-template.S:84 | |
| No locals. | |
| #1 0x0000000000aeb760 in boost::asio::detail::task_io_service::run(boost::system::error_code&) () | |
| No symbol table info available. | |
| #2 0x0000000000aec155 in boost::asio::io_service::run() () | |
| No symbol table info available. | |
| #3 0x0000000000de1578 in thread_proxy () | |
| No symbol table info available. | |
| #4 0x00007f5d04cbc6ba in start_thread (arg=0x7f5d015a4700) | |
| at pthread_create.c:333 | |
| __res = <optimized out> | |
| pd = 0x7f5d015a4700 | |
| now = <optimized out> | |
| unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140037431379712, | |
| 523711773644617196, 0, 140730816566367, 140037431380416, | |
| 140730816567272, -432737397784513044, -432749622600075796}, | |
| mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, | |
| data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}} | |
| not_first_call = <optimized out> | |
| pagesize_m1 = <optimized out> | |
| sp = <optimized out> | |
| freesize = <optimized out> | |
| __PRETTY_FUNCTION__ = "start_thread" | |
| #5 0x00007f5d03b2f82d in clone () | |
| at ../sysdeps/unix/sysv/linux/x86_64/clone.S:109 | |
| No locals. | |
| Thread 3 (Thread 0x7f5cf2dbc700 (LWP 6931)): | |
| #0 pthread_cond_timedwait@@GLIBC_2.3.2 () | |
| at ../sysdeps/unix/sysv/linux/x86_64/pthread_cond_timedwait.S:225 | |
| No locals. | |
| #1 0x00000000006c0789 in bool boost::condition_variable_any::do_timed_wait<boost::unique_lock<boost::mutex> >(boost::unique_lock<boost::mutex>&, timespec const&) () | |
| No symbol table info available. | |
| #2 0x00000000007669ba in rstudio::session::HttpConnectionQueue::waitForConnection(boost::posix_time::time_duration const&) () | |
| No symbol table info available. | |
| #3 0x0000000000766e63 in rstudio::session::HttpConnectionQueue::dequeConnection(boost::posix_time::time_duration const&) () | |
| No symbol table info available. | |
| #4 0x00000000006c47f3 in rstudio::session::ClientEventService::run() () | |
| No symbol table info available. | |
| #5 0x0000000000de1578 in thread_proxy () | |
| No symbol table info available. | |
| #6 0x00007f5d04cbc6ba in start_thread (arg=0x7f5cf2dbc700) | |
| at pthread_create.c:333 | |
| __res = <optimized out> | |
| pd = 0x7f5cf2dbc700 | |
| now = <optimized out> | |
| unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140037188208384, | |
| 523711773644617196, 0, 140730816552559, 140037188209088, | |
| 140730816556272, -433052953326717460, -432749622600075796}, | |
| mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, | |
| data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}} | |
| not_first_call = <optimized out> | |
| pagesize_m1 = <optimized out> | |
| sp = <optimized out> | |
| freesize = <optimized out> | |
| __PRETTY_FUNCTION__ = "start_thread" | |
| #7 0x00007f5d03b2f82d in clone () | |
| at ../sysdeps/unix/sysv/linux/x86_64/clone.S:109 | |
| No locals. | |
| Thread 2 (Thread 0x7f5d025a6700 (LWP 6922)): | |
| #0 pthread_cond_timedwait@@GLIBC_2.3.2 () | |
| at ../sysdeps/unix/sysv/linux/x86_64/pthread_cond_timedwait.S:225 | |
| No locals. | |
| #1 0x0000000000c78f60 in rstudio::core::thread::ThreadsafeQueue<rstudio::core::system::file_monitor::(anonymous namespace)::RegistrationCommand>::wait(boost::posix_time::time_duration const&) [clone .isra.416] [clone .constprop.731] () | |
| No symbol table info available. | |
| #2 0x0000000000c7a10d in rstudio::core::system::file_monitor::(anonymous namespace)::checkForInput() () | |
| No symbol table info available. | |
| #3 0x0000000000cbfb2c in rstudio::core::system::file_monitor::detail::run(boost::function<void ()> const&) () | |
| No symbol table info available. | |
| #4 0x0000000000c7983c in rstudio::core::system::file_monitor::(anonymous namespace)::fileMonitorThreadMain() () | |
| No symbol table info available. | |
| #5 0x0000000000b368ee in boost::detail::thread_data<boost::function<void ()> >::run() () | |
| No symbol table info available. | |
| #6 0x0000000000de1578 in thread_proxy () | |
| No symbol table info available. | |
| #7 0x00007f5d04cbc6ba in start_thread (arg=0x7f5d025a6700) | |
| at pthread_create.c:333 | |
| __res = <optimized out> | |
| pd = 0x7f5d025a6700 | |
| now = <optimized out> | |
| unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140037448165120, | |
| 523711773644617196, 0, 140730816566479, 140037448165824, | |
| 29544656, -432735195540032020, -432749622600075796}, | |
| mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, | |
| data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}} | |
| not_first_call = <optimized out> | |
| pagesize_m1 = <optimized out> | |
| sp = <optimized out> | |
| freesize = <optimized out> | |
| __PRETTY_FUNCTION__ = "start_thread" | |
| #8 0x00007f5d03b2f82d in clone () | |
| at ../sysdeps/unix/sysv/linux/x86_64/clone.S:109 | |
| No locals. | |
| Thread 1 (Thread 0x7f5d01da5700 (LWP 6923)): | |
| #0 0x00007f5d03a5e428 in __GI_raise (sig=sig@entry=6) | |
| at ../sysdeps/unix/sysv/linux/raise.c:54 | |
| resultvar = 0 | |
| pid = 6920 | |
| selftid = 6923 | |
| #1 0x00007f5d03a6002a in __GI_abort () at abort.c:89 | |
| save_stage = 2 | |
| act = {__sigaction_handler = {sa_handler = 0x7ffe7254950f, | |
| sa_sigaction = 0x7ffe7254950f}, sa_mask = {__val = { | |
| 140037439773120, 29540560, 140037470210444, 29507360, 0, | |
| 140730816566543, 29540512, 29507360, 0, 140730816566543, | |
| 140037439773120, 29540560, 140037470210444, 140037439769936, | |
| 29540512, 29507360}}, sa_flags = -201324016, | |
| sa_restorer = 0xffffffff} | |
| sigs = {__val = {32, 0 <repeats 15 times>}} | |
| #2 0x0000000000ca47b9 in rstudio::core::system::abort() () | |
| No symbol table info available. | |
| #3 0x00000000006e35bb in (anonymous namespace)::detectParentTermination() () | |
| No symbol table info available. | |
| #4 0x0000000000b368ee in boost::detail::thread_data<boost::function<void ()> >::run() () | |
| No symbol table info available. | |
| #5 0x0000000000de1578 in thread_proxy () | |
| No symbol table info available. | |
| #6 0x00007f5d04cbc6ba in start_thread (arg=0x7f5d01da5700) | |
| at pthread_create.c:333 | |
| __res = <optimized out> | |
| pd = 0x7f5d01da5700 | |
| now = <optimized out> | |
| unwind_buf = {cancel_jmp_buf = {{jmp_buf = {140037439772416, | |
| 523711773644617196, 0, 140730816566543, 140037439773120, | |
| 29540560, -432738494611786260, -432749622600075796}, | |
| mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x0, 0x0}, | |
| data = {prev = 0x0, cleanup = 0x0, canceltype = 0}}} | |
| not_first_call = <optimized out> | |
| pagesize_m1 = <optimized out> | |
| sp = <optimized out> | |
| freesize = <optimized out> | |
| __PRETTY_FUNCTION__ = "start_thread" | |
| #7 0x00007f5d03b2f82d in clone () | |
| at ../sysdeps/unix/sysv/linux/x86_64/clone.S:109 | |
| No locals. |
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