SimonGreenhill
/ simulate_reads.py
Last active
December 18, 2015 22:39
— forked from dwinter/simulate_reads.py
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import random | |
| def shotgun(iterable, size=12): | |
| """ """ | |
| start = random.choice(range(0, len(iterable)-size)) | |
| return(start, iterable[start:start+size]) | |
| def paired_end(iterable, read_size=10, gap_size=15): | |
| """ """ | |
| start = random.choice(range(0, len(iterable)-(read_size+gap_size))) |