This is a ugly hacked together C# Script that will hide your taskbar for 5 seconds and restores it. A starting point for a custom taskbar maybe?

hidetaskbar.csx

using System.Runtime.InteropServices;
using System;
using System.Windows;
using System.Threading;
using System.Drawing;

public enum TaskbarPosition
{
    Unknown = -1,
    Left,
    Top,
    Right,
    Bottom,
}

public sealed class Taskbar
{
    private const string ClassName = "Shell_TrayWnd";
        [DllImport("user32.dll")]
    private static extern int FindWindow(string className, string windowText);
    [DllImport("user32.dll")]
    private static extern int ShowWindow(IntPtr hwnd, int command);

    private const int SW_HIDE = 0;
    private const int SW_SHOW = 1;

    public Rectangle Bounds
    {
        get;
        private set;
    }
    public TaskbarPosition Position
    {
        get;
        private set;
    }
    public Point Location
    {
        get
        {
            return this.Bounds.Location;
        }
    }
    public Size Size
    {
        get
        {
            return this.Bounds.Size;
        }
    }
    //Always returns false under Windows 7
    public bool AlwaysOnTop
    {
        get;
        private set;
    }
    public bool AutoHide
    {
        get;
        private set;
    }
    private IntPtr taskbarHandle;
    
    public void Show()
    {
        ShowWindow(taskbarHandle, SW_SHOW);
    }

    public void Hide()
    {
        ShowWindow(taskbarHandle, SW_HIDE);
    }

    public Taskbar()
    {
        taskbarHandle = User32.FindWindow(Taskbar.ClassName, null);

        APPBARDATA data = new APPBARDATA();
        data.cbSize = (uint) Marshal.SizeOf(typeof(APPBARDATA));
        data.hWnd = taskbarHandle;
        IntPtr result = Shell32.SHAppBarMessage(ABM.GetTaskbarPos, ref data);
        if (result == IntPtr.Zero)
            throw new InvalidOperationException();

        this.Position = (TaskbarPosition) data.uEdge;
        this.Bounds = Rectangle.FromLTRB(data.rc.left, data.rc.top, data.rc.right, data.rc.bottom);

        data.cbSize = (uint) Marshal.SizeOf(typeof(APPBARDATA));
        result = Shell32.SHAppBarMessage(ABM.GetState, ref data);
        int state = result.ToInt32();
        this.AlwaysOnTop = (state & ABS.AlwaysOnTop) == ABS.AlwaysOnTop;
        this.AutoHide = (state & ABS.Autohide) == ABS.Autohide;
    }
}

public enum ABM : uint
{
    New = 0x00000000,
    Remove = 0x00000001,
    QueryPos = 0x00000002,
    SetPos = 0x00000003,
    GetState = 0x00000004,
    GetTaskbarPos = 0x00000005,
    Activate = 0x00000006,
    GetAutoHideBar = 0x00000007,
    SetAutoHideBar = 0x00000008,
    WindowPosChanged = 0x00000009,
    SetState = 0x0000000A,
}

public enum ABE : uint
{
    Left = 0,
    Top = 1,
    Right = 2,
    Bottom = 3
}

public static class ABS
{
    public const int Autohide = 0x0000001;
    public const int AlwaysOnTop = 0x0000002;
}

public static class Shell32
{
    [DllImport("shell32.dll", SetLastError = true)]
    public static extern IntPtr SHAppBarMessage(ABM dwMessage, [In] ref APPBARDATA pData);
}

public static class User32
{
    [DllImport("user32.dll", SetLastError = true)]
    public static extern IntPtr FindWindow(string lpClassName, string lpWindowName);
}

[StructLayout(LayoutKind.Sequential)]
public struct APPBARDATA
{
    public uint cbSize;
    public IntPtr hWnd;
    public uint uCallbackMessage;
    public ABE uEdge;
    public RECT rc;
    public int lParam;
}

[StructLayout(LayoutKind.Sequential)]
public struct RECT
{
    public int left;
    public int top;
    public int right;
    public int bottom;
}


        Taskbar taskbar = new Taskbar();
        Console.WriteLine("Position: {0}, AlwaysOnTop: {1}; AutoHide: {2}; Bounds: {3}", taskbar.Position, taskbar.AlwaysOnTop, taskbar.AutoHide, taskbar.Bounds);
        Console.WriteLine("Hide task bar for 5 sec");
        taskbar.Hide();
         Thread.Sleep(5*1000);
        Console.WriteLine("Restore task bar!");
        taskbar.Show();