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@SteveBronder
Created July 31, 2020 22:29
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// Code generated by %%NAME%% %%VERSION%%
#include <stan/model/model_header.hpp>
namespace tester_model_namespace {
inline void validate_positive_index(const char *var_name, const char *expr,
int val) {
if (val < 1) {
std::stringstream msg;
msg << "Found dimension size less than one in simplex declaration"
<< "; variable=" << var_name << "; dimension size expression=" << expr
<< "; expression value=" << val;
std::string msg_str(msg.str());
throw std::invalid_argument(msg_str.c_str());
}
}
inline void validate_unit_vector_index(const char *var_name, const char *expr,
int val) {
if (val <= 1) {
std::stringstream msg;
if (val == 1) {
msg << "Found dimension size one in unit vector declaration."
<< " One-dimensional unit vector is discrete"
<< " but the target distribution must be continuous."
<< " variable=" << var_name << "; dimension size expression=" << expr;
} else {
msg << "Found dimension size less than one in unit vector declaration"
<< "; variable=" << var_name << "; dimension size expression=" << expr
<< "; expression value=" << val;
}
std::string msg_str(msg.str());
throw std::invalid_argument(msg_str.c_str());
}
}
using stan::io::dump;
using stan::math::lgamma;
using stan::model::cons_list;
using stan::model::index_max;
using stan::model::index_min;
using stan::model::index_min_max;
using stan::model::index_multi;
using stan::model::index_omni;
using stan::model::index_uni;
using stan::model::model_base_crtp;
using stan::model::nil_index_list;
using stan::model::rvalue;
using std::istream;
using std::pow;
using std::string;
using std::stringstream;
using std::vector;
using namespace stan::math;
static int current_statement__ = 0;
static const std::vector<string> locations_array__ = {
" (found before start of program)",
" (in '../tester.stan', line 9, column 2 to column 25)",
" (in '../tester.stan', line 10, column 2 to column 25)",
" (in '../tester.stan', line 14, column 2 to column 45)",
" (in '../tester.stan', line 2, column 2 to column 8)",
" (in '../tester.stan', line 3, column 2 to column 8)",
" (in '../tester.stan', line 4, column 9 to column 10)",
" (in '../tester.stan', line 4, column 2 to column 14)",
" (in '../tester.stan', line 5, column 9 to column 10)",
" (in '../tester.stan', line 5, column 12 to column 13)",
" (in '../tester.stan', line 5, column 2 to column 17)",
" (in '../tester.stan', line 9, column 17 to column 18)"};
class tester_model final : public model_base_crtp<tester_model> {
private:
int N;
int M;
Eigen::Matrix<double, -1, 1> y;
Eigen::Matrix<double, -1, -1> x;
public:
~tester_model() final {}
std::string model_name() const final { return "tester_model"; }
std::vector<std::string> model_compile_info() const {
std::vector<std::string> stanc_info;
stanc_info.push_back("stanc_version = %%NAME%%3 %%VERSION%%");
stanc_info.push_back("stancflags = ");
return stanc_info;
}
tester_model(stan::io::var_context &context__, unsigned int random_seed__ = 0,
std::ostream *pstream__ = nullptr)
: model_base_crtp(0) {
using local_scalar_t__ = double;
boost::ecuyer1988 base_rng__ =
stan::services::util::create_rng(random_seed__, 0);
(void)base_rng__; // suppress unused var warning
static const char *function__ = "tester_model_namespace::tester_model";
(void)function__; // suppress unused var warning
local_scalar_t__ DUMMY_VAR__(std::numeric_limits<double>::quiet_NaN());
(void)DUMMY_VAR__; // suppress unused var warning
try {
int pos__;
pos__ = std::numeric_limits<int>::min();
pos__ = 1;
current_statement__ = 4;
context__.validate_dims("data initialization", "N", "int",
context__.to_vec());
N = std::numeric_limits<int>::min();
current_statement__ = 4;
N = context__.vals_i("N")[(1 - 1)];
current_statement__ = 5;
context__.validate_dims("data initialization", "M", "int",
context__.to_vec());
M = std::numeric_limits<int>::min();
current_statement__ = 5;
M = context__.vals_i("M")[(1 - 1)];
current_statement__ = 6;
validate_non_negative_index("y", "N", N);
current_statement__ = 7;
context__.validate_dims("data initialization", "y", "double",
context__.to_vec(N));
y = Eigen::Matrix<double, -1, 1>(N);
stan::math::fill(y, std::numeric_limits<double>::quiet_NaN());
{
std::vector<local_scalar_t__> y_flat__;
current_statement__ = 7;
assign(y_flat__, nil_index_list(), context__.vals_r("y"),
"assigning variable y_flat__");
current_statement__ = 7;
pos__ = 1;
current_statement__ = 7;
for (int sym1__ = 1; sym1__ <= N; ++sym1__) {
current_statement__ = 7;
assign(y, cons_list(index_uni(sym1__), nil_index_list()),
y_flat__[(pos__ - 1)], "assigning variable y");
current_statement__ = 7;
pos__ = (pos__ + 1);
}
}
current_statement__ = 8;
validate_non_negative_index("x", "N", N);
current_statement__ = 9;
validate_non_negative_index("x", "M", M);
current_statement__ = 10;
context__.validate_dims("data initialization", "x", "double",
context__.to_vec(N, M));
x = Eigen::Matrix<double, -1, -1>(N, M);
stan::math::fill(x, std::numeric_limits<double>::quiet_NaN());
{
std::vector<local_scalar_t__> x_flat__;
current_statement__ = 10;
assign(x_flat__, nil_index_list(), context__.vals_r("x"),
"assigning variable x_flat__");
current_statement__ = 10;
pos__ = 1;
current_statement__ = 10;
for (int sym1__ = 1; sym1__ <= M; ++sym1__) {
current_statement__ = 10;
for (int sym2__ = 1; sym2__ <= N; ++sym2__) {
current_statement__ = 10;
assign(x,
cons_list(index_uni(sym2__),
cons_list(index_uni(sym1__), nil_index_list())),
x_flat__[(pos__ - 1)], "assigning variable x");
current_statement__ = 10;
pos__ = (pos__ + 1);
}
}
}
current_statement__ = 11;
validate_non_negative_index("beta", "M", M);
} catch (const std::exception &e) {
stan::lang::rethrow_located(e, locations_array__[current_statement__]);
// Next line prevents compiler griping about no return
throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
}
num_params_r__ = 0U;
try {
num_params_r__ += M;
num_params_r__ += 1;
} catch (const std::exception &e) {
stan::lang::rethrow_located(e, locations_array__[current_statement__]);
// Next line prevents compiler griping about no return
throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
}
}
template <bool propto__, bool jacobian__, typename T__>
inline T__ log_prob(std::vector<T__> &params_r__,
std::vector<int> &params_i__,
std::ostream *pstream__ = nullptr) const {
using local_scalar_t__ = T__;
T__ lp__(0.0);
stan::math::accumulator<T__> lp_accum__;
static const char *function__ = "tester_model_namespace::log_prob";
(void)function__; // suppress unused var warning
stan::io::reader<local_scalar_t__> in__(params_r__, params_i__);
local_scalar_t__ DUMMY_VAR__(std::numeric_limits<double>::quiet_NaN());
(void)DUMMY_VAR__; // suppress unused var warning
try {
Eigen::Matrix<std::complex<local_scalar_t__>, -1, 1> beta;
beta = Eigen::Matrix<std::complex<local_scalar_t__>, -1, 1>(M);
stan::math::fill(beta, DUMMY_VAR__);
current_statement__ = 1;
beta = in__.complex_vector(M);
std::complex<local_scalar_t__> sigma;
sigma = DUMMY_VAR__;
current_statement__ = 2;
sigma = in__.complex();
current_statement__ = 2;
if (jacobian__) {
current_statement__ = 2;
sigma = stan::math::lb_constrain(sigma, 0, lp__);
} else {
current_statement__ = 2;
sigma = stan::math::lb_constrain(sigma, 0);
}
{
current_statement__ = 3;
lp_accum__.add(normal_lpdf<false>(y, multiply(x, beta), sigma));
}
} catch (const std::exception &e) {
stan::lang::rethrow_located(e, locations_array__[current_statement__]);
// Next line prevents compiler griping about no return
throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
}
lp_accum__.add(lp__);
return lp_accum__.sum();
} // log_prob()
template <typename RNG>
inline void write_array(RNG &base_rng__, std::vector<double> &params_r__,
std::vector<int> &params_i__,
std::vector<double> &vars__,
bool emit_transformed_parameters__ = true,
bool emit_generated_quantities__ = true,
std::ostream *pstream__ = nullptr) const {
using local_scalar_t__ = double;
vars__.resize(0);
stan::io::reader<local_scalar_t__> in__(params_r__, params_i__);
static const char *function__ = "tester_model_namespace::write_array";
(void)function__; // suppress unused var warning
(void)function__; // suppress unused var warning
double lp__ = 0.0;
(void)lp__; // dummy to suppress unused var warning
stan::math::accumulator<double> lp_accum__;
local_scalar_t__ DUMMY_VAR__(std::numeric_limits<double>::quiet_NaN());
(void)DUMMY_VAR__; // suppress unused var warning
try {
Eigen::Matrix<std::complex<double>, -1, 1> beta;
beta = Eigen::Matrix<std::complex<double>, -1, 1>(M);
stan::math::fill(beta, std::numeric_limits<double>::quiet_NaN());
current_statement__ = 1;
beta = in__.complex_vector(M);
std::complex<std::complex<double>> sigma;
sigma = std::numeric_limits<double>::quiet_NaN();
current_statement__ = 2;
sigma = in__.complex();
current_statement__ = 2;
sigma = stan::math::lb_constrain(sigma, 0);
for (int sym1__ = 1; sym1__ <= M; ++sym1__) {
vars__.emplace_back(beta[(sym1__ - 1)]);
}
vars__.emplace_back(sigma);
if (logical_negation((primitive_value(emit_transformed_parameters__) ||
primitive_value(emit_generated_quantities__)))) {
return;
}
if (logical_negation(emit_generated_quantities__)) {
return;
}
} catch (const std::exception &e) {
stan::lang::rethrow_located(e, locations_array__[current_statement__]);
// Next line prevents compiler griping about no return
throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
}
} // write_array()
inline void transform_inits(const stan::io::var_context &context__,
std::vector<int> &params_i__,
std::vector<double> &vars__,
std::ostream *pstream__) const final {
using local_scalar_t__ = double;
vars__.clear();
vars__.reserve(num_params_r__);
try {
int pos__;
pos__ = std::numeric_limits<int>::min();
pos__ = 1;
Eigen::Matrix<std::complex<double>, -1, 1> beta;
beta = Eigen::Matrix<std::complex<double>, -1, 1>(M);
stan::math::fill(beta, std::numeric_limits<double>::quiet_NaN());
{
std::vector<std::complex<local_scalar_t__>> beta_flat__;
current_statement__ = 1;
assign(beta_flat__, nil_index_list(), context__.vals_r("beta"),
"assigning variable beta_flat__");
current_statement__ = 1;
pos__ = 1;
current_statement__ = 1;
for (int sym1__ = 1; sym1__ <= M; ++sym1__) {
current_statement__ = 1;
assign(beta, cons_list(index_uni(sym1__), nil_index_list()),
beta_flat__[(pos__ - 1)], "assigning variable beta");
current_statement__ = 1;
pos__ = (pos__ + 1);
}
}
std::complex<std::complex<double>> sigma;
sigma = std::numeric_limits<double>::quiet_NaN();
current_statement__ = 2;
sigma = context__.vals_r("sigma")[(1 - 1)];
current_statement__ = 2;
sigma = stan::math::lb_free(sigma, 0);
for (int sym1__ = 1; sym1__ <= M; ++sym1__) {
vars__.emplace_back(beta[(sym1__ - 1)]);
}
vars__.emplace_back(sigma);
} catch (const std::exception &e) {
stan::lang::rethrow_located(e, locations_array__[current_statement__]);
// Next line prevents compiler griping about no return
throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
}
} // transform_inits()
inline void get_param_names(std::vector<std::string> &names__) const {
names__.clear();
names__.emplace_back("beta");
names__.emplace_back("sigma");
} // get_param_names()
inline void get_dims(std::vector<std::vector<size_t>> &dimss__) const final {
dimss__.clear();
dimss__.emplace_back(std::vector<size_t>{static_cast<size_t>(M)});
dimss__.emplace_back(std::vector<size_t>{});
} // get_dims()
inline void
constrained_param_names(std::vector<std::string> &param_names__,
bool emit_transformed_parameters__ = true,
bool emit_generated_quantities__ = true) const final {
for (int sym1__ = 1; sym1__ <= M; ++sym1__) {
{
param_names__.emplace_back(std::string() + "beta" + '.' +
std::to_string(sym1__));
}
}
param_names__.emplace_back(std::string() + "sigma");
if (emit_transformed_parameters__) {
}
if (emit_generated_quantities__) {
}
} // constrained_param_names()
inline void unconstrained_param_names(
std::vector<std::string> &param_names__,
bool emit_transformed_parameters__ = true,
bool emit_generated_quantities__ = true) const final {
for (int sym1__ = 1; sym1__ <= M; ++sym1__) {
{
param_names__.emplace_back(std::string() + "beta" + '.' +
std::to_string(sym1__));
}
}
param_names__.emplace_back(std::string() + "sigma");
if (emit_transformed_parameters__) {
}
if (emit_generated_quantities__) {
}
} // unconstrained_param_names()
inline std::string get_constrained_sizedtypes() const {
stringstream s__;
s__ << "[{\"name\":\"beta\",\"type\":{\"name\":\"complex_vector\","
"\"length\":"
<< M
<< "},\"block\":\"parameters\"},{\"name\":\"sigma\",\"type\":{\"name\":"
"\"complex\"},\"block\":\"parameters\"}]";
return s__.str();
} // get_constrained_sizedtypes()
inline std::string get_unconstrained_sizedtypes() const {
stringstream s__;
s__ << "[{\"name\":\"beta\",\"type\":{\"name\":\"complex_vector\","
"\"length\":"
<< M
<< "},\"block\":\"parameters\"},{\"name\":\"sigma\",\"type\":{\"name\":"
"\"complex\"},\"block\":\"parameters\"}]";
return s__.str();
} // get_unconstrained_sizedtypes()
// Begin method overload boilerplate
template <typename RNG>
inline void write_array(RNG &base_rng__,
Eigen::Matrix<double, Eigen::Dynamic, 1> &params_r,
Eigen::Matrix<double, Eigen::Dynamic, 1> &vars,
bool emit_transformed_parameters__ = true,
bool emit_generated_quantities__ = true,
std::ostream *pstream = nullptr) const {
std::vector<double> params_r_vec(params_r.size());
for (int i = 0; i < params_r.size(); ++i)
params_r_vec[i] = params_r(i);
std::vector<double> vars_vec;
std::vector<int> params_i_vec;
write_array(base_rng__, params_r_vec, params_i_vec, vars_vec,
emit_transformed_parameters__, emit_generated_quantities__,
pstream);
vars.resize(vars_vec.size());
for (int i = 0; i < vars.size(); ++i)
vars(i) = vars_vec[i];
}
template <bool propto__, bool jacobian__, typename T_>
inline T_ log_prob(Eigen::Matrix<T_, Eigen::Dynamic, 1> &params_r,
std::ostream *pstream = nullptr) const {
std::vector<T_> vec_params_r;
vec_params_r.reserve(params_r.size());
for (int i = 0; i < params_r.size(); ++i)
vec_params_r.push_back(params_r(i));
std::vector<int> vec_params_i;
return log_prob<propto__, jacobian__, T_>(vec_params_r, vec_params_i,
pstream);
}
inline void
transform_inits(const stan::io::var_context &context,
Eigen::Matrix<double, Eigen::Dynamic, 1> &params_r,
std::ostream *pstream__ = nullptr) const {
std::vector<double> params_r_vec;
std::vector<int> params_i_vec;
transform_inits(context, params_i_vec, params_r_vec, pstream__);
params_r.resize(params_r_vec.size());
for (int i = 0; i < params_r.size(); ++i)
params_r(i) = params_r_vec[i];
}
};
} // namespace tester_model_namespace
using stan_model = tester_model_namespace::tester_model;
#ifndef USING_R
// Boilerplate
stan::model::model_base &new_model(stan::io::var_context &data_context,
unsigned int seed,
std::ostream *msg_stream) {
stan_model *m = new stan_model(data_context, seed, msg_stream);
return *m;
}
#endif
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