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conda install packages on google colab notebooks
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# install anaconda 5.10 | |
! wget -c https://repo.continuum.io/archive/Anaconda3-5.1.0-Linux-x86_64.sh | |
! chmod +x Anaconda3-5.1.0-Linux-x86_64.sh | |
! bash ./Anaconda3-5.1.0-Linux-x86_64.sh -b -f -p /usr/local | |
import sys | |
sys.path.append('/usr/local/lib/python3.6/site-packages/') | |
# install conda dependencies | |
! conda install -y --prefix /usr/local pytorch==0.4.0 torchvision=0.1.8 -c pytorch | |
! conda install -y --prefix /usr/local tifffile=0.15.0 -c conda-forge | |
# install pytorch_fnet from github | |
! git clone https://github.com/AllenCellModeling/pytorch_fnet | |
! cd pytorch_fnet; git checkout release_1; $(which python) setup.py install | |
# run tests | |
! cd pytorch_fnet; ./scripts/test_run.sh |
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