mortal_rabbits.ipynb

protein_translation.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Given an mRNA sequence, return the protein sequence.\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MWHQLLYVDHRRLHSMVGLTMLHLVFIFRVVDSRSETRNRKRSAINRRSCGFSNYKSYGRCEAARPARPFCANMCQICFATMGPLRRLSRRQYRKLQNMRRGRALAVAPLKTGLWRQWDLQVLRSWALGMLLFGVGLFLDEYQSQKGRASRISHFIQLSAATWHNQPPVTGYCIEVERPITVAFTSKYPVQLYQGRGHPTTLRPLGGGKELPFSSILRVRPADFGSNLVPLALVSLTWHQCASFLRRLFPRSLLVIFVSLREDVGTIDIMGVTFPQGRTYRRYDVLGCNRAAGEGALKWRMLRDRKNWELSDWWGCFSKPWLSIHHGRKFEAIQTCSPPRAGRNPNTFTTHPTSVWPPLGYAFDVEPVGEGRDTDNFRVKTFCGRLLSRFDQPDLKQVRSKVSTHSSTCCSSLREACGSLTPAYSQTRGETLAYPGSQHPARCIPYGKFRIRVVSLVTMYPPYCLTLMVLAYRIDILSELGRFAPMQKLCGLPAISTSGRRHLSSSSLVSHSLIGAVAGAVYCKSGFAVQQGRRGAAILARSEGGKLGWFTRAYHVSLREIGPVGCDHVGYLRGTHTMWRRETMFRAREIILRRFRCSIFDQTILTKLGCSASSPSLCDSAMRIRRPLGFMGRTMRYHFLRRRRDYHTIQTMRPRDALYDNMGRHSFDELRSSLRGAISCLSESGKPKKEVCPDVLLATILACQRRPVSVSLTPLEIDSLLIIGAVPTTRVSEAIRYIAYTPLIARSYTTISIVVGGPRYCTGSPSTPGRRLSSWRETIEASLQCPVIDLPQVVLAATACLKRHEAAAHCNPLLIQHLDCYRSSKPIGCTTARIQKSHSFLSQSQKPSSAQVLPSFSGEHWDSVWHFRFVPSIRCTRILCTPKIEPSIPRQTSPVATLQLFTYCLNAIVDLNTANLLSARSEWPMALPRPHQGRLNLTEKHLTRGLRMTLVKAELMLPIKGSMYSVKLFLPRVTAGELVQLIFVQRSAAGLEFGPNIVLTGRKPLSTKSSRGSLFRFTGFEGSLCFRLSMLINSFAALKHAKVIYISVPIYPRRWRSVGHKRHGGLNATLRLTLNYRQAEWTNIRDVFSFASRCVRNTYTFRRRRRLSLCCVSQRLTDVIRGLHGFARRAPPITVMPSLNGCTVQTEPVAIQAANDSKKLYSASLLPQNILNALASLGRTSSWVASYFCSSGLKDEWLLCAMIPRPVCGMITSNYSQTNVRRRLGTGAARRRSALSSVFVGRVRIQDFILLTIDFRSGGLRKGNPLASHIPRIKPKCLTLRSSNFGWILDVPHYSSLSLYGFLPWPQSAASVTALAVATLAWHKSIVATCLFTGILCSCAPCTSAWPLAECLLYKFTINKYIRIPTQARRRRVNVAVPYLTQDFPVLSDSCAVKHRAISRGTRVRRDASICDHAHAEHCGQSGHDVSALCALVVRSTIPKMDAEILPPEYSHPGPAANAIQDDPSSIWLASILDAGERRNRRNAMPVILARLFPAYSSPDRAWPVFTMGQMPDTSRHFPAIGHARLNHDKTRVTYLPSFQTHRAGMTVGPATIRITSEEFCSHSFRRLGRLFDVLKAYPNLISQPRSRFTAVALRLKRYYVRARRVRRRARKGQGPLLGARVCVSAALSPCAVSPPTTGPNLDNVRIEAMEDPGRLGPFSKKRKRLLYGKRRSVELVFEFYCWSTRMTHLVSIEELKRTRGLKEIDTITARASATCPRRVCSLTGCVRGLMPTTVGPCHVGRLASVRTGEAPETVDQSSYTAVATEIILSQCITSAGKPLKGQDAPIMCRWARGHVGSAITLAPPTHSLVPIQRGSSPPLRALGREGELLQNSVKRPRVALVAVDAHRQSCHPSTNWRRLRKRITVTSLNYISIKKRTIAYTETFKGAPITCVLINPLSSNWNRSARGHGDVKYLRAGLNIITESVYGPTKSSVHSYARHSVGSGGDQGWRCFQYVAKFNVQFKLPHYRRRAVFGLAQHSQSPGSSYFGQFPNSGPLIRILKKGGGDHYVYRSLIRTIEFLRRWSLRTLCKVGIPSCPLLHARANISVQRAVGVDLSYTTTLMPVVLASIVRLTMLGDNILKLHAVYWNNPSHVNPKTPEVSSIVICSSRLDKAITAELNGEKLVGTMSSKTMFHVGWISPTVQSARPTLLGWRRARDASCASVTVRHHTLLARSTDAQCSEFMLRRKGGVVTIPAARVYPRTPGREVTLVLTLAVDTRKHTHSRVTLCTNLCLTERATPGRFSVQVLLAWSTDVFRLSDLRGAMSPKLCRLRLVWGKKLGRLVSRHRRASQLAFGLIFYLQSTVFPLPVANRSSPVTIWAPRVSLAPMWPIRDYTKRIRRLGAHWSCVTDDKMKRVGFKSRLASYIVRLELLNSFYVAYSGNTSTIGFNVRRPLYDSCAIGGLDYQAHKSIRWNQIGSLVARNIPCTDVAPYECHLTPIPWIFRPTGISNRGTSQKLAATRGQALCSPDWLEMPKPSTIESPETSLLPHEYCRPKNPFALKGVHAHVGAPVYNKSRVLLKRAMDCLRTPNCLSNHDFQWGEKSPQACPVTTATTRKAYECMKYRPQLPKYIDKSYGQDVGSAIAVYLSGAGDIVLTLRQAPTRAFANSYRCRGIKKASKALLSGVIIPTSDPHPRPDGITLLRCDDDDTPGSFDFAAPINLEKLPQPIFMPTLLGRSETPVDRRQTISLYAEDTNLRWLILEQFDCFPQCGWPLRGPSSFLELWLSRLFGSWSKTLRLRAMVNCSCRCPFLAALCTFPVLETRNEYFTFPKLWLVGRTFYSSSVRLRVEQSEGYIQDSRKAPSLLRNKGSSILLRRISILWVLHLGCRELLSPQIGLPKRDARTSTATGRRLHLRPRMVNSSRQLTMPWCQSRRSGAEIVLLVNVTEVRHMPRCLAEFHRGGRTWCVVRESGSSPEANPCSVMRVRNILISLLFRIMNLPRQQSRPAMSSYELASIVDTPTNQRYGRTGVDKSAPPMVAEGVSPGIAALLMIAGMVQARLEDLVMVRACEGILRDVRLSTYLSGGPVILPEGYWASIQSRRALVSGRQHLDSAAPFLKENLTSSRMQYIPLASKRCDVTALPKYSKRPELVIH\n"
     ]
    }
   ],
   "source": [
    "# I have better things to do\n",
    "\n",
    "from Bio.Seq import Seq\n",
    "from Bio.Alphabet import generic_rna\n",
    "\n",
    "s = open(\"/home/scott/Dropbox/rosalind/rosalind_prot.txt\").read()\n",
    "print(Seq(s, generic_rna).translate(to_stop = True))"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 2",
   "language": "python",
   "name": "python2"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 2
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython2",
   "version": "2.7.6"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 0
}