brew doctor output

gistfile1.txt

$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
    /usr/local/lib/IKStealthPedalAPI.dylib
    /usr/local/lib/IKStompIO1API.dylib
    /usr/local/lib/libqmi_api.dylib
    /usr/local/lib/libwkhtmltox.0.10.0.dylib
    /usr/local/lib/libwkhtmltox.0.10.dylib
    /usr/local/lib/libwkhtmltox.0.dylib
    /usr/local/lib/libwkhtmltox.dylib
    /usr/local/lib/ZTENdis51Service.dylib

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
    /usr/local/include/event-config.h
    /usr/local/include/fontforge/autowidth.h
    /usr/local/include/fontforge/baseviews.h
    /usr/local/include/fontforge/basics.h
    /usr/local/include/fontforge/bezctx_ff.h
    /usr/local/include/fontforge/bitmapcontrol.h
    /usr/local/include/fontforge/chardata.h
    /usr/local/include/fontforge/charset.h
    /usr/local/include/fontforge/config.h
    /usr/local/include/fontforge/configure-pfaedit.h
    /usr/local/include/fontforge/delta.h
    /usr/local/include/fontforge/dynamic.h
    /usr/local/include/fontforge/edgelist.h
    /usr/local/include/fontforge/edgelist2.h
    /usr/local/include/fontforge/encoding.h
    /usr/local/include/fontforge/fffreetype.h
    /usr/local/include/fontforge/ffpython.h
    /usr/local/include/fontforge/fileutil.h
    /usr/local/include/fontforge/fontforgevw.h
    /usr/local/include/fontforge/fvmetrics.h
    /usr/local/include/fontforge/gdraw.h
    /usr/local/include/fontforge/gfile.h
    /usr/local/include/fontforge/ggadget.h
    /usr/local/include/fontforge/gicons.h
    /usr/local/include/fontforge/gimage.h
    /usr/local/include/fontforge/gio.h
    /usr/local/include/fontforge/gkeysym.h
    /usr/local/include/fontforge/gprogress.h
    /usr/local/include/fontforge/gresedit.h
    /usr/local/include/fontforge/gresource.h
    /usr/local/include/fontforge/groups.h
    /usr/local/include/fontforge/gwidget.h
    /usr/local/include/fontforge/gwwiconv.h
    /usr/local/include/fontforge/import.h
    /usr/local/include/fontforge/intl.h
    /usr/local/include/fontforge/libffstamp.h
    /usr/local/include/fontforge/lookups.h
    /usr/local/include/fontforge/mm.h
    /usr/local/include/fontforge/namehash.h
    /usr/local/include/fontforge/nonlineartrans.h
    /usr/local/include/fontforge/ofl.h
    /usr/local/include/fontforge/pfaedit.h
    /usr/local/include/fontforge/PfEd.h
    /usr/local/include/fontforge/plugins.h
    /usr/local/include/fontforge/prefpage.h
    /usr/local/include/fontforge/print.h
    /usr/local/include/fontforge/psfont.h
    /usr/local/include/fontforge/savefont.h
    /usr/local/include/fontforge/scriptfuncs.h
    /usr/local/include/fontforge/scripting.h
    /usr/local/include/fontforge/sd.h
    /usr/local/include/fontforge/search.h
    /usr/local/include/fontforge/sfd1.h
    /usr/local/include/fontforge/sflayoutP.h
    /usr/local/include/fontforge/splinefont.h
    /usr/local/include/fontforge/stemdb.h
    /usr/local/include/fontforge/ttf.h
    /usr/local/include/fontforge/ttfinstrs.h
    /usr/local/include/fontforge/uiinterface.h
    /usr/local/include/fontforge/unicoderange.h
    /usr/local/include/fontforge/ustring.h
    /usr/local/include/fontforge/utype.h
    /usr/local/include/fuse/fuse.h
    /usr/local/include/fuse/fuse_common.h
    /usr/local/include/fuse/fuse_common_compat.h
    /usr/local/include/fuse/fuse_compat.h
    /usr/local/include/fuse/fuse_darwin.h
    /usr/local/include/fuse/fuse_lowlevel.h
    /usr/local/include/fuse/fuse_lowlevel_compat.h
    /usr/local/include/fuse/fuse_opt.h
    /usr/local/include/fuse.h
    /usr/local/include/jack/control.h
    /usr/local/include/jack/intclient.h
    /usr/local/include/jack/jack.h
    /usr/local/include/jack/jslist.h
    /usr/local/include/jack/midiport.h
    /usr/local/include/jack/ringbuffer.h
    /usr/local/include/jack/session.h
    /usr/local/include/jack/statistics.h
    /usr/local/include/jack/systemdeps.h
    /usr/local/include/jack/thread.h
    /usr/local/include/jack/transport.h
    /usr/local/include/jack/types.h
    /usr/local/include/jack/weakjack.h
    /usr/local/include/jack/weakmacros.h
    /usr/local/include/neon/ne_207.h
    /usr/local/include/neon/ne_acl.h
    /usr/local/include/neon/ne_alloc.h
    /usr/local/include/neon/ne_auth.h
    /usr/local/include/neon/ne_basic.h
    /usr/local/include/neon/ne_compress.h
    /usr/local/include/neon/ne_dates.h
    /usr/local/include/neon/ne_defs.h
    /usr/local/include/neon/ne_i18n.h
    /usr/local/include/neon/ne_locks.h
    /usr/local/include/neon/ne_md5.h
    /usr/local/include/neon/ne_props.h
    /usr/local/include/neon/ne_redirect.h
    /usr/local/include/neon/ne_request.h
    /usr/local/include/neon/ne_session.h
    /usr/local/include/neon/ne_socket.h
    /usr/local/include/neon/ne_ssl.h
    /usr/local/include/neon/ne_string.h
    /usr/local/include/neon/ne_uri.h
    /usr/local/include/neon/ne_utils.h
    /usr/local/include/neon/ne_xml.h
    /usr/local/include/neon/ne_xmlreq.h
    /usr/local/include/node/config.h
    /usr/local/include/node/eio.h
    /usr/local/include/node/ev.h
    /usr/local/include/node/node_config.h
    /usr/local/include/node/node_events.h
    /usr/local/include/php/ext/gd/gdttf.h
    /usr/local/include/php/ext/mbstring/oniguruma/php_onig_compat.h
    /usr/local/include/php/ext/pcre/pcrelib/internal.h
    /usr/local/include/php/ext/pcre/pcrelib/pcre_scanner.h
    /usr/local/include/php/ext/pcre/pcrelib/pcre_stringpiece.h
    /usr/local/include/php/ext/pcre/pcrelib/pcrecpp.h
    /usr/local/include/php/ext/pcre/pcrelib/pcrecpparg.h
    /usr/local/include/php/ext/pcre/pcrelib/ucpinternal.h
    /usr/local/include/php/ext/pcre/pcrelib/ucptable.h
    /usr/local/include/php/ext/session/mod_mm.h
    /usr/local/include/php/ext/spl/spl_sxe.h
    /usr/local/include/php/ext/sqlite/libsqlite/src/sqlite.h
    /usr/local/include/php/ext/standard/dns.h
    /usr/local/include/php/ext/standard/php_sunfuncs.h
    /usr/local/include/php/ext/standard/reg.h
    /usr/local/include/php/ext/standard/url_scanner.h
    /usr/local/include/php/main/config.w32.h
    /usr/local/include/php/main/php3_compat.h
    /usr/local/include/php/main/php_regex.h
    /usr/local/include/php/main/safe_mode.h
    /usr/local/include/php/regex/cclass.h
    /usr/local/include/php/regex/cname.h
    /usr/local/include/php/regex/regex.h
    /usr/local/include/php/regex/regex2.h
    /usr/local/include/php/regex/regex_extra.h
    /usr/local/include/php/regex/utils.h
    /usr/local/include/php/TSRM/acconfig.h
    /usr/local/include/php/Zend/acconfig.h
    /usr/local/include/php/Zend/FlexLexer.h
    /usr/local/include/php/Zend/zend_fast_cache.h
    /usr/local/include/php/Zend/zend_mm.h
    /usr/local/include/php/Zend/zend_reflection_api.h
    /usr/local/include/sane/sane.h
    /usr/local/include/sane/saneopts.h
    /usr/local/include/usb.h
    /usr/local/include/usbpp.h
    /usr/local/include/wkhtmltox/image.h
    /usr/local/include/wkhtmltox/pdf.h

Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:

    binutilsfb
    boostfb
    libeventfb
    php54-propro
    php54-raphf

Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:

    brew install php54 php56

Run `brew missing` for more details.