PairwiseSeqLocalBiopython.py

# Import pairwise2 module
from Bio import pairwise2

# Import format_alignment method
from Bio.pairwise2 import format_alignment

# Define two sequences to be aligned
X = "ACGGGT"
Y = "ACG"

# Get a list of the local alignments between the two sequences ACGGGT and ACG
# No parameters. Identical characters have score of 1, else 0.
# No gap penalties.
alignments = pairwise2.align.localxx(X, Y)

# Use format_alignment method to format the alignments in the list
for a in alignments:
    print(format_alignment(*a))