ChimeraX command file to load many mrc files in for RGB viewing

ManyElementsinChimeraX.cxc

# Reds

open "../C_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #2 style surface color red
volume #2 projectionmode 3d
volume #2 hide

open "../Al_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #3 style surface color red
volume #3 projectionmode 3d
volume #3 hide

open "../Fe_reconstruction_cropped.mrc" 
view orient cofr false
volume voxelsize 1
volume median #1 binSize 3
close #1
volume #4 style surface color red level 6.24
volume #4 projectionmode 3d
volume #4 show

# Greens

open "../Ca_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #5 style surface color limegreen
volume #5 projectionmode 3d
volume #5 hide

open "../Mg_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #6 style surface color limegreen level 3.51
volume #6 projectionmode 3d
volume #6 hide

open "../Ni_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #7 style surface color limegreen level 0.502
volume #7 projectionmode 3d
volume #7 show

# Blues

open "../O_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #8 style surface color royalblue
volume #8 projectionmode 3d
volume #8 hide

open "../Si_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #9 style surface color royalblue
volume #9 projectionmode 3d
volume #9 hide

open "../S_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #10 style surface color royalblue level 5.56
volume #10 projectionmode 3d
volume #10 show

open "../Cr_reconstruction_cropped.mrc" 
volume voxelsize 1
view orient cofr false
volume median #1 binSize 3
close #1
volume #11 style surface color royalblue
volume #11 projectionmode 3d
volume #11 hide

open "../HAADF_reconstruction_cropped.mrc" 
volume bin #1 binsize 1
volume #12 voxelsize 0.166666667 
view orient cofr false
close #1
volume #12 style surface color white
volume #12 projectionmode 3d
volume #12 hide

# Clear surfaces

open "../O_reconstruction_cropped.mrc" 
volume #1 voxelsize 1
view orient cofr false
volume gaussian #1 sdev 1.0
close #1
volume #13 style surface color gray transparency 0.66 level 8.14
volume #13 projectionmode 3d
volume #13 hide

open "../Si_reconstruction_cropped.mrc" 
volume #1 voxelsize 1
view orient cofr false
volume gaussian #1 sdev 1.0
close #1
volume #14 style surface color gray transparency 0.66 level 3.64
volume #14 projectionmode 3d
volume #14 show

view matrix camera 0.089597,0.031674,-0.99547,-82.421,0.99335,-0.075458,0.087004,34.241,-0.072361,-0.99665,-0.038224,20.671

lighting shadows true intensity 0.5

##movie record ; turn y 1 360 ; wait ; movie encode