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aaronsaunders/usearch_derep.bash

Created July 23, 2013 07:13
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usear dereplication command line
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usearch_derep.bash
# Dereplication
usearch --sort reads.fa --output reads.sorted.fa
usearch --derep_fullseq --cluster reads.sorted.fa --seedsout unique.fa [--uc results.uc] [--sizeoout] [--minsize n] [--slots n] [--w wordlength]
usearch --derep_fullseq --cluster reads.sorted.fa --seedsout unique.fa --uc results.uc
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