Created
November 21, 2012 15:39
-
-
Save aaronwolen/4125510 to your computer and use it in GitHub Desktop.
Install bioconductor for older versions of R
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| install.packages(c("RCurl", "XML")) | |
| bioc.v <- tools:::.BioC_version_associated_with_R_version | |
| repos <- tools:::.read_repositories(file.path(R.home("etc"), "repositories")) | |
| bioc.repo <- repos["BioCsoft",]$URL | |
| bioc.repo <- sub("2\\.\\d+", bioc.v, bioc.repo) | |
| packages <- c("zlibbioc", "BiocGenerics", "Biobase", "IRanges", | |
| "AnnotationDbi", "GenomicRanges", "Biostrings", "Rsamtools", | |
| "BSgenome", "rtracklayer") | |
| install.packages(packages, repos = bioc.repo) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment