Created
June 7, 2020 09:59
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otherlanguage in nextflow
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#!/usr/bin/env nextflow | |
/* | |
################ | |
NEXTFLOW Global Config | |
################ | |
*/ | |
params.outdir = "results" | |
/* | |
################ | |
GROOVY CODE (NATIVE) | |
################ | |
*/ | |
name = Channel.from( 'Clojure', 'ClojureScript', 'Scheme', 'OCaml') | |
process groovyPrintNames1 { | |
scratch true | |
input: | |
val name | |
exec: | |
println "Hello Mr. $name" | |
} | |
///////////////// | |
num = Channel.from( 1, 2, 3 ) | |
process basic_example { | |
input: | |
val num | |
output: | |
stdout basic_example | |
"echo process job $num" | |
} | |
basic_example.println {it.trim()} | |
///////////////// | |
name = Channel.from( 'Clojure', 'ClojureScript', 'Scheme', 'OCaml') | |
process groovyPrintNames2 { | |
input: | |
val a_name from name | |
// output: | |
// stdout groovy_result | |
exec: | |
println "Hello Mr. $a_name" | |
} | |
/* | |
################ | |
BASH SHELL | |
################ | |
*/ | |
process bashShell { | |
output: | |
stdout bashShell_result | |
shell: | |
""" | |
printf $SHELL | |
""" | |
} | |
bashShell_result.println { it.trim() } | |
/* | |
################ | |
FISH SHELL | |
################ | |
*/ | |
process fishShell { | |
output: | |
stdout fishShell_result | |
shell: | |
""" | |
#!/usr/bin/env fish | |
printf $SHELL | |
""" | |
} | |
fishShell_result.println { "FISH Shell: "+ it.trim() } | |
/* | |
################ | |
ELVISH SHELL | |
################ | |
*/ | |
process elvishShell { | |
output: | |
stdout elvishShell_result | |
shell: | |
""" | |
#!/usr/bin/env elvish | |
put "Hello, Elvish!" | |
""" | |
} | |
elvishShell_result.println { "Elvish Shell: "+ it.trim() } | |
/* | |
################ | |
GOLANG SCRIPT | |
################ | |
*/ | |
process GoScripts { | |
output: | |
stdout GoScripts_result | |
shell: | |
""" | |
#!/usr/bin/env gorun | |
package main | |
import ( | |
"fmt" | |
"os" | |
) | |
func main() { | |
s := "GoLang" | |
if len(os.Args) > 1 { | |
s = os.Args[1] | |
} | |
fmt.Printf("Hello, %v!", s) | |
fmt.Println("") | |
if s == "fail" { | |
os.Exit(30) | |
} | |
} | |
""" | |
} | |
GoScripts_result.println { it.trim() } | |
/* | |
################ | |
# PYTHON STUFF | |
################ | |
*/ | |
process pyStuff { | |
output: | |
stdout pyStuff_result | |
""" | |
#!/usr/bin/env python3 | |
x = 'Hello, ' | |
y = 'World!' | |
print(x+y) | |
""" | |
} | |
pyStuff_result.println { it.trim() } | |
/* | |
################ | |
# OCAML STUFF | |
################ | |
*/ | |
process ocaml_process { | |
output: | |
stdout ocaml_process_result | |
""" | |
#!/usr/bin/env ocaml | |
print_string "Hello world!";; | |
""" | |
} | |
ocaml_process_result.println {"OCaml Results: " + it.trim() } |
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