acthp

acthp

import xenaPython as xena

host = xena.PUBLIC_HUBS["pancanAtlasHub"]
cohort ="TCGA PanCanAtlas"
samples = xena.cohort_samples(host, cohort, None)

genes = ["FOXM1", "TP53"]
expression_dataset = "EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena"
[foxm1_expresssion_by_sample, tp53_expression_by_sample] = xena.dataset_fetch(host, expression_dataset, samples, genes)

acthp

(ns matrix-test.core-test
  (:require [clojure.test :refer :all]
            [clojure.test.check :as tc]
            [clojure.test.check.generators :as gen]
            [clojure.test.check.properties :as prop]
            [matrix-test.core :refer :all]))

(def element gen/int)

(defn matrix-size [[w h]]

acthp

	describe.only('example', function () {
		it('should find visible element, low arity', function () {
			browser.execute(function () {
				document.body.innerHTML = '<div id="a" class="a">foo</div><div id="b">blah</div>';
			});

			// We pretend we're waiting on a list of dom elements to be
			// created.
			browser.waitUntil(
				() => browser.elements('//*[@class="a"]').value.length > 0,

acthp

(ns try-spark.spark
  (:refer-clojure :exclude [map filter reduce first name take min distinct max count])
  (:require [clojure.core :as core])
  (:require [clojure.reflect :as r])
  (:import org.apache.spark.sql.api.java.JavaSchemaRDD))

; Parameter classes that we have to wrap in order to
; call rdd methods with plain clojure functions.
(def func-types
  (into #{}

acthp

(let [t (fn [type prop]   ; type hint a property
          (with-meta prop {:tag type}))  
      cc (fn [prop]       ; camel-case a property
           (str (.toUpperCase (subs (str prop) 0 1)) (subs (str prop) 1)))
      m (fn [prop method] ; construct method name for property
          (symbol (str method (cc prop)))) 

      bean-interface (fn [bean-name & props]  ; define interface for bean
                       (let [set (fn [type prop]
                                   `(~(m prop 'set) [~(t type 's)]))

acthp

(defn fizzbizz [x]
  (reduce (fn [a [s d]] (get [s] (mod x d) a))
          x
          [["bizz" 5]["fizz" 3]["fizzbizz" 15]]))

acthp

// haml loader for requirejs
(function() {

function register(text, haml) {
	var plugin = Object.create(text); // inherit methods of the text loader

	function wrapload(fn) {
		return function(value) {
			fn(haml.compileHaml({source: value}));
		}

acthp

define(['text', 'lib/haml'], function(text, haml) {
	var plugin = Object.create(text); // inherit methods of the text loader

	function wrapload(fn) {
		return function(value) {
			fn(haml.compileHaml({source: value}));
		}
	}

	function load(name, req, onload, config) {

acthp

(function() {

	var loadSource = function(file, onSourceLoad) {
		if (!file.fileSrc.match(/js-test/)) {
			return false;
		}

		require([file.fileSrc], function() {
			onSourceLoad({file: file, success: true, message: ''});
		}, function(err) {