Retrieve requirements.yml file and install all the roles with:
ansible-galaxy install -r requirements.yml -p roles
Create an inventory file such as the following
[my-galaxy-server]
129.114.18.39 ansible_ssh_private_key_file=key_pair.pem ansible_ssh_user=eafgan # Jetstream via Atmo
If Ansible 2.1.0+ is installed on the host, before running the playbook, download ansible.cfg file to the same dir as the playbook. Run the playbook with
ansible-playbook -i inventory playbook.yml
| [defaults] | |
| allow_world_readable_tmpfiles=True | |
| callback_whitelist = profile_tasks |
| - hosts: my-galaxy-server | |
| become: yes | |
| become_user: root | |
| vars: | |
| galaxyFS_base_dir: /opt/galaxy | |
| galaxy_server_dir: "{{ galaxyFS_base_dir}}/galaxy-app" | |
| galaxy_mutable_config_dir: "{{ galaxyFS_base_dir }}/config" | |
| galaxy_user_name: galaxy | |
| galaxy_db_port: 5432 | |
| galaxy_config_dir: "{{ galaxy_server_dir }}/config" | |
| galaxy_shed_tools_dir: "{{ galaxyFS_base_dir }}/shed_tools" | |
| roles: | |
| - name: galaxy-os | |
| postgres_user_uid: 1110 | |
| install_maintainance_packages: no | |
| configure_docker: no | |
| - name: galaxy-nginx | |
| - name: galaxy-psql | |
| postgresql_conf: | |
| port: "{{ galaxy_db_port }}" | |
| - name: galaxy-psql-objects | |
| become_user: postgres | |
| postgresql_objects_port: "{{ galaxy_db_port }}" | |
| postgresql_objects_users: | |
| - name: galaxy | |
| role_attr_flags: CREATEDB,LOGIN | |
| password: gxydbpwd | |
| - name: galaxyftp | |
| password: gxyftppwd | |
| role_attr_flags: LOGIN | |
| postgresql_objects_databases: | |
| - name: galaxy | |
| owner: galaxy | |
| - name: bash_command | |
| cmd: 'mkdir -p /opt/galaxy/galaxy-app' | |
| - name: bash_command | |
| cmd: 'chown -R galaxy:galaxy /opt/galaxy' | |
| - name: galaxy | |
| become_user: galaxy | |
| galaxy_vcs: git | |
| galaxy_changeset_id: release_16.04 | |
| galaxy_config: | |
| "server:main": | |
| port: 8080 | |
| host: 127.0.0.1 | |
| "app:main": | |
| admin_users: [email protected] | |
| database_connection: postgresql://{{ galaxy_user_name }}:gxydbpwd@localhost:{{ galaxy_db_port }}/galaxy | |
| install_database_connection: sqlite:///{{ galaxy_mutable_config_dir }}/galaxy_install_db.sqlite?isolation_level=IMMEDIATE | |
| nginx_x_accel_redirect_base: /_x_accel_redirect | |
| nginx_upload_store: "{{ galaxyFS_base_dir }}/upload_store" | |
| nginx_upload_path: /_upload | |
| len_file_path: "{{ galaxy_mutable_config_dir }}/len" | |
| builds_file_path: "{{ galaxy_server_dir }}/tool-data/shared/ucsc/builds.txt" | |
| "filter:gzip": | |
| use: egg:Paste#gzip | |
| "filter:proxy-prefix": | |
| use: egg:PasteDeploy#prefix | |
| prefix: /galaxy | |
| # galaxy_mutable_configs: | |
| # - src: "{{ galaxy_server_dir }}/config/migrated_tools_conf.xml.sample" | |
| # dest: "{{ galaxy_config['app:main']['migrated_tools_config'] if galaxy_config is defined and 'app:main' in galaxy_config and 'migrated_tools_config' in galaxy_config['app:main'] else galaxy_config_default['app:main']['migrated_tools_config'] }}" | |
| # - src: "{{ galaxy_server_dir }}/config/shed_data_manager_conf.xml.sample" | |
| # dest: "{{ galaxy_config['app:main']['shed_data_manager_config_file'] if galaxy_config is defined and 'app:main' in galaxy_config and 'shed_data_manager_config_file' in galaxy_config['app:main'] else galaxy_config_default['app:main']['shed_data_manager_config_file'] }}" | |
| # - src: "{{ galaxy_server_dir }}/config/shed_tool_data_table_conf.xml.sample" | |
| # dest: "{{ galaxy_config['app:main']['shed_tool_data_table_config'] if galaxy_config is defined and 'app:main' in galaxy_config and 'shed_tool_data_table_config' in galaxy_config['app:main'] else galaxy_config_default['app:main']['shed_tool_data_table_config'] }}" | |
| # - src: "{{ galaxy_server_dir }}/config/datatypes_conf.xml.sample" | |
| # dest: "{{ galaxy_config['app:main']['datatypes_config_file'] if galaxy_config is defined and 'app:main' in galaxy_config and 'datatypes_config_file' in galaxy_config['app:main'] else galaxy_config_default['app:main']['datatypes_config_file'] }}" | |
| # - src: "{{ galaxy_server_dir }}/config/tool_data_table_conf.xml.sample" | |
| # dest: "{{ galaxy_config['app:main']['tool_data_table_config_path'] }}" | |
| # - src: "{{ galaxy_server_dir }}/config/tool_conf.xml.sample" | |
| # dest: "{{ galaxy_config_dir }}/tool_conf.xml" | |
| - name: trackster | |
| become_user: galaxy | |
| # - name: galaxy-tools | |
| # galaxy_tools_galaxy_instance_url: '' | |
| # galaxy_tools_api_key: '' | |
| # galaxy_tools_tool_list_files: ['tool_list.yaml.sample'] # Copy this file to root dir |
| - src: https://github.com/galaxyproject/ansible-galaxy-os | |
| name: galaxy-os | |
| - src: https://github.com/galaxyproject/ansible-nginx | |
| name: galaxy-nginx | |
| - src: https://github.com/galaxyproject/ansible-postgresql | |
| name: galaxy-psql | |
| - src: https://github.com/natefoo/ansible-postgresql-objects | |
| name: galaxy-psql-objects | |
| - src: https://github.com/galaxyproject/ansible-galaxy | |
| name: galaxy | |
| - src: https://github.com/galaxyproject/ansible-trackster | |
| name: trackster | |
| - src: https://github.com/dkreuer/ansible-role-bash-cmd | |
| name: bash_command | |
| version: patch-1 | |
| - src: https://github.com/galaxyproject/ansible-galaxy-tools | |
| name: galaxy-tools | |