André F. Rendeiro afrendeiro

	#! python3.7

	import argparse
	import os
	import numpy as np
	import speech_recognition as sr
	import whisper
	import torch

	from datetime import datetime, timedelta

	"""
	Re-analyze GeoMx data from Rendeiro et al. 2021 doi:s41586-021-03475-6

	Requirements (Python 3.10+):
	pip install \
	"anndata" \
	"matplotlib>=3.8.3" \
	"numpy>=1.26.4" \
	"pandas>=2.1.0" \
	"scanpy" \

	"""
	Download file from Google Drive URL
	"""
	import os
	import time

	import click
	from selenium import webdriver
	from selenium.webdriver.common.by import By
	from selenium.webdriver.firefox.options import Options as FirefoxOptions

	"""
	Use dataloaders with nuclei coordinates for training.
	"""

	from functools import partial

	import requests
	import h5py
	from tqdm import tqdm
	import numpy as np

	#!/bin/bash

	# Terminate on first error
	set -e

	# Check if input file is provided
	if [ -z "$1" ]; then
	echo "Usage: $0 <input_file.pdf>"
	exit 1
	fi

	#!/usr/bin/env python

	"""
	A simple example of how to use the Accelerator API
	to train a vision model on a dummy dataset.

	Accelerator enables training on a single or multiple GPUs.

	Run once `accelerate config` to set up your configuration file.

	"""
	Run the experiments for the quantization speedup and plot results.
	"""

	import subprocess

	import numpy as np
	import pandas as pd
	import matplotlib.pyplot as plt
	import seaborn as sns

	"""
	Convert a TIFF file generated by IndicaLabs (HALO) to a usable TIFF file.
	"""

	import typing as tp
	from pathlib import Path
	from xml.etree import ElementTree

	import tifffile
	from tifffile.tiffcomment import tiffcomment