Elastix build exception

gistfile1.txt

In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:28:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkLimiterFunctionBase.h:102:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void Initialize( void ) throw ( ExceptionObject ) {}
                                   ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:28:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkLimiterFunctionBase.h:102:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void Initialize( void ) throw ( ExceptionObject ) {}
                                   ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:37:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/Transforms/itkAdvancedCombinationTransform.h:350:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void NoCurrentTransformSet( void ) const throw ( ExceptionObject );
                                                    ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/Transforms/itkAdvancedCombinationTransform.h:638:0,
                 from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:37,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/Transforms/itkAdvancedCombinationTransform.hxx:735:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::NoCurrentTransformSet( void ) const throw ( ExceptionObject )
                                       ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43:0,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:265:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void Initialize( void ) throw ( ExceptionObject ) ITK_OVERRIDE;
                                   ^~~~~
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:466:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void InitializeImageSampler( void ) throw ( ExceptionObject );
                                               ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:37:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/Transforms/itkAdvancedCombinationTransform.h:350:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void NoCurrentTransformSet( void ) const throw ( ExceptionObject );
                                                    ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/Transforms/itkAdvancedCombinationTransform.h:638:0,
                 from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:37,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/Transforms/itkAdvancedCombinationTransform.hxx:735:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::NoCurrentTransformSet( void ) const throw ( ExceptionObject )
                                       ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43:0,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:265:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void Initialize( void ) throw ( ExceptionObject ) ITK_OVERRIDE;
                                   ^~~~~
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:466:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void InitializeImageSampler( void ) throw ( ExceptionObject );
                                               ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:570:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx:153:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::Initialize( void ) throw ( ExceptionObject )
                      ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:570:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx:360:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::InitializeImageSampler( void ) throw ( ExceptionObject )
                                  ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:570:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx:153:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::Initialize( void ) throw ( ExceptionObject )
                      ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.h:570:0,
                 from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:43,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx:360:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::InitializeImageSampler( void ) throw ( ExceptionObject )
                                  ^~~~~
In file included from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25:0,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:264:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void Initialize() throw ( ExceptionObject );
                             ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:309:0,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.hxx:99:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::Initialize( void ) throw ( ExceptionObject )
                      ^~~~~
In file included from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25:0,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:264:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void Initialize() throw ( ExceptionObject );
                             ^~~~~
In file included from /home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.h:309:0,
                 from /home/jovyan/work/build/Elastix/Core/ComponentBaseClasses/elxRegistrationBase.h:25,
                 from /home/jovyan/work/build/Elastix/Core/Kernel/elxElastixTemplate.h:30,
                 from /home/jovyan/work/build/Elastix/Core/Install/elxIncludes.h:39,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.h:21,
                 from /home/jovyan/work/build/Elastix/Components/FixedImagePyramids/FixedGenericPyramid/elxFixedGenericPyramid.cxx:19:
/home/jovyan/work/build/Elastix/Common/itkMultiResolutionImageRegistrationMethod2.hxx:99:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
 ::Initialize( void ) throw ( ExceptionObject )
                      ^~~~~
c++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/build.make:62: recipe for target 'Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o' failed
make[5]: *** [Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/elxFixedGenericPyramid.cxx.o] Error 4
CMakeFiles/Makefile2:592: recipe for target 'Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/all' failed
make[4]: *** [Components/FixedImagePyramids/FixedGenericPyramid/CMakeFiles/FixedGenericPyramid.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs....
[ 14%] Linking CXX static library ../../../bin/libFixedRecursivePyramid-4.9.a
[ 14%] Built target FixedRecursivePyramid
Makefile:129: recipe for target 'all' failed
make[3]: *** [all] Error 2
CMakeFiles/Elastix.dir/build.make:116: recipe for target 'Elastix-prefix/src/Elastix-stamp/Elastix-build' failed
make[2]: *** [Elastix-prefix/src/Elastix-stamp/Elastix-build] Error 2
CMakeFiles/Makefile2:363: recipe for target 'CMakeFiles/Elastix.dir/all' failed
make[1]: *** [CMakeFiles/Elastix.dir/all] Error 2
Makefile:83: recipe for target 'all' failed
make: *** [all] Error 2
The command '/bin/sh -c pip install --upgrade pip;     pip install --requirement /tmp/requirements.txt;     cd $HOME/work;     git clone https://github.com/SuperElastix/SimpleElastix;    mkdir build;     cd build;     cmake ../SimpleElastix/SuperBuild;     make -j2' returned a non-zero code: 2