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agarny/noble_model_1962.sedml

Created October 9, 2019 20:37
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SED-ML L1V4: example showing how to plot dV/dt
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noble_model_1962.sedml
<?xml version='1.0' encoding='UTF-8'?>
<sedML level="1" version="4" xmlns="http://sed-ml.org/sed-ml/level1/version4" xmlns:cellml="http://www.cellml.org/cellml/1.0#">
<listOfModels>
<model id="model" language="urn:sedml:language:cellml.1_0" source="noble_model_1962.cellml"/>
</listOfModels>
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0" numberOfSteps="1000" outputEndTime="1000" outputStartTime="0">
<algorithm kisaoID="KISAO:0000019">
<listOfAlgorithmParameters>
<algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
<algorithmParameter kisaoID="KISAO:0000481" value="true"/>
<algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
<algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
<algorithmParameter kisaoID="KISAO:0000480" value="0"/>
<algorithmParameter kisaoID="KISAO:0000415" value="500"/>
<algorithmParameter kisaoID="KISAO:0000467" value="0"/>
<algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
<algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000479" value="0"/>
</listOfAlgorithmParameters>
</algorithm>
</uniformTimeCourse>
</listOfSimulations>
<listOfTasks>
<repeatedTask id="repeatedTask" range="once" resetModel="true">
<listOfRanges>
<vectorRange id="once">
<value> 1 </value>
</vectorRange>
</listOfRanges>
<listOfSubTasks>
<subTask order="1" task="task1"/>
</listOfSubTasks>
</repeatedTask>
<task id="task1" modelReference="model" simulationReference="simulation1"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="xDataGenerator1_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_1 </ci>
</math>
<listOfVariables>
<variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
</dataGenerator>
<dataGenerator id="yDataGenerator1_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_1 </ci>
</math>
<listOfVariables>
<variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='V']" taskReference="repeatedTask"/>
</listOfVariables>
</dataGenerator>
<dataGenerator id="xDataGenerator2_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_1 </ci>
</math>
<listOfVariables>
<variable id="xVariable2_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
</dataGenerator>
<dataGenerator id="yDataGenerator2_1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable2_1 </ci>
</math>
<listOfVariables>
<variable id="yVariable2_1" symbol="urn:sedml:symbol:rateOfChange" target="/cellml:model/cellml:component[@name='membrane']/cellml:variable[@name='V']" taskReference="repeatedTask"/>
</listOfVariables>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1" legend="true">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<backgroundColor>#ffffff</backgroundColor>
<fontSize>10</fontSize>
<foregroundColor>#000000</foregroundColor>
<height>1</height>
<gridLines>
<style>dot</style>
<width>1</width>
<color>#a0a0a4</color>
</gridLines>
<pointCoordinates>
<style>dash</style>
<width>1</width>
<color>#b0008080</color>
<fontColor>#ffffff</fontColor>
</pointCoordinates>
<surroundingArea>
<backgroundColor>#ececec</backgroundColor>
<foregroundColor>#000000</foregroundColor>
</surroundingArea>
<xAxis>
<title/>
</xAxis>
<yAxis>
<title/>
</yAxis>
<zoomRegion>
<style>solid</style>
<width>1</width>
<color>#b0800000</color>
<fontColor>#ffffff</fontColor>
<filled>true</filled>
<fillColor>#30ffff00</fillColor>
</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve1_1" name="V" style="style1_1" type="points" xDataReference="xDataGenerator1_1" yDataReference="yDataGenerator1_1">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<selected>true</selected>
</properties>
</annotation>
</curve>
</listOfCurves>
</plot2D>
<plot2D id="plot2" legend="true">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<backgroundColor>#ffffff</backgroundColor>
<fontSize>10</fontSize>
<foregroundColor>#000000</foregroundColor>
<height>1</height>
<gridLines>
<style>dot</style>
<width>1</width>
<color>#a0a0a4</color>
</gridLines>
<pointCoordinates>
<style>dash</style>
<width>1</width>
<color>#b0008080</color>
<fontColor>#ffffff</fontColor>
</pointCoordinates>
<surroundingArea>
<backgroundColor>#ececec</backgroundColor>
<foregroundColor>#000000</foregroundColor>
</surroundingArea>
<xAxis>
<title/>
</xAxis>
<yAxis>
<title/>
</yAxis>
<zoomRegion>
<style>solid</style>
<width>1</width>
<color>#b0800000</color>
<fontColor>#ffffff</fontColor>
<filled>true</filled>
<fillColor>#30ffff00</fillColor>
</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" name="V'" style="style2_1" type="points" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<selected>true</selected>
</properties>
</annotation>
</curve>
</listOfCurves>
</plot2D>
</listOfOutputs>
<listOfStyles>
<style id="style1_1">
<line color="0072BD" style="solid" thickness="2"/>
<marker fill="FFFFFF" lineColor="0072BD" size="8" style="none"/>
</style>
<style id="style2_1">
<line color="0072BD" style="solid" thickness="2"/>
<marker fill="FFFFFF" lineColor="0072BD" size="8" style="none"/>
</style>
</listOfStyles>
</sedML>
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