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@dhimmel
dhimmel / autobib.py
Created April 29, 2016 00:30
Automatically create BibTeX entries from DOIs
"""
This file contains python functions for automatically retreiving DOI metadata
and creating bibtex references. `get_bibtex_entry(doi)` creates a bibtex entry
for a DOI. It fixes a Data Cite author name parsing issue. Short DOIs are used
for bibtex citation keys.
Created by Daniel Himmelstein and released under CC0 1.0.
"""
import urllib.request
from rdkit import Chem
from rdkit.Chem import AllChem
raw_smiles = 'CC'
molecule = Chem.MolFromSmiles('CC')
canonical_smiles = Chem.MolToSmiles(molecule)
print raw_smiles
print canonical_smiles
@ChristinaLK
ChristinaLK / run.singularity.sh
Last active April 28, 2019 12:57
Using singularity image to run jobs in CHTC
#!/bin/bash
img=$1
exec=$2
shift 2
args=$*
singularity exec -B $_CONDOR_SCRATCH_DIR:/scratch $img /scratch/$exec $args