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@ChristinaLK
ChristinaLK / run.singularity.sh
Last active April 28, 2019 12:57
Using singularity image to run jobs in CHTC
#!/bin/bash
img=$1
exec=$2
shift 2
args=$*
singularity exec -B $_CONDOR_SCRATCH_DIR:/scratch $img /scratch/$exec $args
from rdkit import Chem
from rdkit.Chem import AllChem
raw_smiles = 'CC'
molecule = Chem.MolFromSmiles('CC')
canonical_smiles = Chem.MolToSmiles(molecule)
print raw_smiles
print canonical_smiles
@dhimmel
dhimmel / autobib.py
Created April 29, 2016 00:30
Automatically create BibTeX entries from DOIs
"""
This file contains python functions for automatically retreiving DOI metadata
and creating bibtex references. `get_bibtex_entry(doi)` creates a bibtex entry
for a DOI. It fixes a Data Cite author name parsing issue. Short DOIs are used
for bibtex citation keys.
Created by Daniel Himmelstein and released under CC0 1.0.
"""
import urllib.request