gistfile1.txt

See also http://gist.github.com/286775

#This test used 5 threads, and 500 alignments.
Andrew-Grimms-MacBook-Pro:alignment_threading_replication agrimm$ rake
(in /Users/agrimm/ruby/alignment_threading_replication)
Loaded suite test/test_multithreaded_alignment
Started
F
Finished in 3.202942 seconds.

  1) Failure:
test_alignment_works_in_multiple_threads(TestAlignment) [test/test_multithreaded_alignment.rb:34]:
Can't handle multiple threaded scenario.
Exception raised:
Class: <RuntimeError>
Message: <"alignment result is inconsistent with input data">
---Backtrace---
/Library/Ruby/Gems/1.8/gems/bio-1.4.0/lib/bio/alignment.rb:2083:in `do_align'
test/test_multithreaded_alignment.rb:50:in `join'
test/test_multithreaded_alignment.rb:50:in `test_alignment_works_in_multiple_threads'
test/test_multithreaded_alignment.rb:50:in `each'
test/test_multithreaded_alignment.rb:50:in `test_alignment_works_in_multiple_threads'
test/test_multithreaded_alignment.rb:34:in `test_alignment_works_in_multiple_threads'
---------------

1 tests, 1 assertions, 1 failures, 0 errors
rake aborted!
Command failed with status (1): [/System/Library/Frameworks/Ruby.framework/...]
/Users/agrimm/ruby/alignment_threading_replication/rakefile:4
(See full trace by running task with --trace)
Andrew-Grimms-MacBook-Pro:alignment_threading_replication agrimm$ ruby -v
ruby 1.8.7 (2008-08-11 patchlevel 72) [universal-darwin10.0]

Andrew-Grimms-MacBook-Pro:alignment_threading_replication agrimm$ ruby -e 'require "rubygems"; require "bio"; p Bio::BIORUBY_VERSION'
[1, 4, 0]