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| test_import | |
| testing poisson on 1 node (8 mpi tasks) | |
| Initializing NumericalSolution for poisson_3d_c0p1pe8 | |
| System includes: | |
| poisson_3d_c0p1pe8 | |
| Setting Archiver(s) | |
| Setting up MultilevelMesh | |
| Building one multilevel mesh for all models | |
| Generating mesh for poisson_3d_c0p1pe8 | |
| Building 11 x 11 x 11 rectangular mesh for poisson_3d_c0p1pe8 | |
| Generating tetrahedral mesh | |
| Partitioning mesh among 8 processors using partitioningType = 1 | |
| Number of Subdomain Elements Owned= 893 | |
| Number of Subdomain Elements = 893 | |
| Number of Subdomain Nodes Owned= 167 | |
| Number of Subdomain Nodes = 251 | |
| Number of Subdomain elementBoundaries Owned= 1818 | |
| Number of Subdomain elementBoundaries = 1954 | |
| Number of Subdomain Edges Owned= 989 | |
| Number of Subdomain Edges = 1311 | |
| Finished partitioning | |
| *** Global *** | |
| Number of tetrahedra : 6000 | |
| Number of triangles : 12600 | |
| Number of edges : 7930 | |
| Number of nodes : 1331 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| *** Local *** | |
| Number of tetrahedra : 893 | |
| Number of triangles : 1954 | |
| Number of edges : 1311 | |
| Number of nodes : 251 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| Numerical Solution Sparse diffusion information key (0, 0) = (array([0, 3, 6, 9], dtype=int32), array([0, 1, 2, 0, 1, 2, 0, 1, 2], dtype=int32)) | |
| Setting up MultilevelTransport for poisson_3d_c0p1pe8 | |
| Building Transport for each mesh | |
| Generating Trial Space | |
| Generating Test Space | |
| Allocating u | |
| Allocating phi | |
| Setting Boundary Conditions | |
| Setting Boundary Conditions-1 | |
| Setting Boundary Conditions-2 | |
| Setting Boundary Conditions-2a | |
| Setting Boundary Conditions-3 | |
| Setting Boundary Conditions-4 | |
| Initializing OneLevelTransport | |
| Sparse diffusion information key (0, 0) = (array([0, 3, 6, 9], dtype=int32), array([0, 1, 2, 0, 1, 2, 0, 1, 2], dtype=int32)) | |
| Shallow copy of trial shape is being used for test shape w | |
| Shallow copy of trial shape is being used for test shape grad(w) | |
| Shallow copy of trial shape is being used for test shape w | |
| Updating local to global mappings | |
| Building time integration object | |
| Calculating numerical quadrature formulas | |
| Element Quadrature | |
| Element Boundary Quadrature | |
| Global Exterior Element Boundary Quadrature | |
| Allocating residual and solution vectors | |
| Allocating Jacobian | |
| Building sparse matrix structure | |
| Allocating parallel storage | |
| Allocating ghosted parallel vectors on rank 0 | |
| Allocating un-ghosted parallel vectors on rank 0 | |
| Allocating matrix on rank 0 | |
| ParMat_petsc4py comm.rank= 0 blockSize = 1 par_n= 167 par_N=1331 par_nghost=84 par_jacobian.getSizes()= ((167, 1331), (167, 1331)) | |
| Building Mesh Transfers | |
| Setting poisson_3d_c0p1pe8 stepController to proteus.StepControl.SC_base | |
| Setting up MultilevelLinearSolver forpoisson_3d_c0p1pe8 | |
| multilevelLinearSolverChooser type= proteus.LinearSolvers.KSP_petsc4py | |
| Setting up MultilevelNonLinearSolver for poisson_3d_c0p1pe8 | |
| Finished setting up models and solvers | |
| Setting up SimTools for poisson_3d_c0p1pe8 | |
| Building tnList from model = poisson_3d_c0p1pe8 nDTout = 1 | |
| Time sequence[0.0, 1.0] | |
| Setting poisson_3d_c0p1pe8 systemStepController to object of type proteus.SplitOperator.Sequential_MinModelStep | |
| Finished NumericalSolution initialization | |
| Setting initial conditions | |
| No initial conditions provided for model poisson_3d_c0p1pe8 | |
| Attaching models and running spin-up step if requested | |
| Archiving initial conditions | |
| Writing initial mesh for model = poisson_3d_c0p1pe8 | |
| Writing initial conditions for model = poisson_3d_c0p1pe8 | |
| Estimating initial time derivative and initializing time history for model poisson_3d_c0p1pe8 | |
| Choosing initial time step for model poisson_3d_c0p1pe8 | |
| Initializing time step on model poisson_3d_c0p1pe8 to dt = 1.00000e+00 | |
| Initializing time history for model step controller | |
| Auxiliary variable calculations for model poisson_3d_c0p1pe8 | |
| Syncing Archive | |
| Initializing time step on system Default System to dt = 1.00000e+00 | |
| Initializing step sequence for system Default System to [(1.0, <proteus.Transport.MultilevelTransport instance at 0x198af80>)] | |
| Starting time stepping | |
| ============================================================== | |
| Solving over interval [ 0.00000e+00, 1.00000e+00] | |
| ============================================================== | |
| ===========================================================dt system orig1.0 | |
| =========================================================dt system final1.0 | |
| System time step t= 1.00000e+00, dt= 1.00000e+00 | |
| Split operator iteration 0 | |
| Model: poisson_3d_c0p1pe8 | |
| Fractional step 1.00000e+00 for model poisson_3d_c0p1pe8 | |
| Step exact called for model poisson_3d_c0p1pe8 | |
| StepControl base stepExact t_model= 1.0 tOut= 1.0 t_model_last= 0.0 dt_model= 1.0 setting to 1.0 | |
| Model step t= 1.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe8 | |
| Model substep t= 1.00000e+00 for model poisson_3d_c0p1pe8 | |
| Model substep t= 1.00000e+00 for model poisson_3d_c0p1pe8 model.timeIntegration.t= 1.00000e+00 | |
| Newton it 0 norm(r) = 3.84901e+00 norm(r)/(rtol*norm(r0)+atol) = 3.84901e+08 test=r | |
| before ksp.rtol= 0.0 ksp.atol= 1e-10 ksp.converged= False ksp.its= 0 ksp.norm= 0.0 | |
| KSP it 0 norm(r) = 3.849005e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 1 norm(r) = 7.283893e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 2 norm(r) = 5.081705e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 3 norm(r) = 4.092574e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 4 norm(r) = 3.103884e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 5 norm(r) = 2.357611e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 6 norm(r) = 1.752327e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 7 norm(r) = 1.212315e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 8 norm(r) = 7.984756e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 9 norm(r) = 4.390265e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 10 norm(r) = 2.354764e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 11 norm(r) = 1.310163e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 12 norm(r) = 6.998554e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 13 norm(r) = 3.603234e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 14 norm(r) = 1.968359e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 15 norm(r) = 1.078245e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 16 norm(r) = 5.885932e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 17 norm(r) = 3.434257e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 18 norm(r) = 1.965744e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 19 norm(r) = 1.166844e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 20 norm(r) = 6.933724e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 21 norm(r) = 3.994538e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 22 norm(r) = 2.047567e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 23 norm(r) = 1.103869e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 24 norm(r) = 6.410539e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 25 norm(r) = 3.492116e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 26 norm(r) = 1.846544e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 27 norm(r) = 9.537978e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 28 norm(r) = 4.839875e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 29 norm(r) = 2.583094e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 30 norm(r) = 1.192665e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 30 norm(r) = 1.192665e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 31 norm(r) = 6.725477e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 32 norm(r) = 3.724717e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 33 norm(r) = 1.786424e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 34 norm(r) = 9.072462e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 35 norm(r) = 4.934334e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 36 norm(r) = 2.752002e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 37 norm(r) = 1.576695e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 38 norm(r) = 9.096477e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 39 norm(r) = 5.327327e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 40 norm(r) = 3.145093e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 41 norm(r) = 1.947884e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 42 norm(r) = 1.135531e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 43 norm(r) = 6.171302e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 44 norm(r) = 3.778894e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 45 norm(r) = 2.694696e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 46 norm(r) = 2.094167e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 47 norm(r) = 1.489101e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 48 norm(r) = 8.536112e-11; atol=1.000000e-10 rtol=0.000000e+00 | |
| after ksp.rtol= 0.0 ksp.atol= 1e-10 ksp.converged= True ksp.its= 48 ksp.norm= 4.35978715065e-11 reason = 4 | |
| Newton it 1 norm(r) = 8.53599e-11 norm(r)/(rtol*norm(r0)+atol) = 8.53599e-03 | |
| SO_base modelStepTaken for model= poisson_3d_c0p1pe8 t_system_last= 0.0 t_model_last= 0.0 setting to t_stepSequence= 1.0 | |
| Step Taken, t_stepSequence= 1.0 Model step t= 1.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe8 | |
| SplitOperator_Min choose_dt_system t_system_last= 1.0 dt_system= 1.0 t_system= 2.0 | |
| Step Taken, System time step t= 2.00000e+00, dt= 1.00000e+00 | |
| Step Taken, Model step t= 2.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe8 | |
| Writing mesh header for model = poisson_3d_c0p1pe8 at time t=1.0 | |
| Writing solution for model = poisson_3d_c0p1pe8 | |
| Syncing Archive | |
| Syncing Archive | |
| Finished calculating solution | |
| Closing solution archive for poisson_3d_c0p1pe8 | |
| Closing Archive | |
| Done Closing Archive | |
| Gathering Archive | |
| Done Gathering Archive | |
| Initializing NumericalSolution for poisson_3d_c0p2pe8 | |
| System includes: | |
| poisson_3d_c0p2pe8 | |
| Setting Archiver(s) | |
| Setting up MultilevelMesh | |
| Building one multilevel mesh for all models | |
| Generating mesh for poisson_3d_c0p2pe8 | |
| Building 11 x 11 x 11 rectangular mesh for poisson_3d_c0p2pe8 | |
| Generating tetrahedral mesh | |
| Partitioning mesh among 8 processors using partitioningType = 1 | |
| Number of Subdomain Elements Owned= 893 | |
| Number of Subdomain Elements = 893 | |
| Number of Subdomain Nodes Owned= 167 | |
| Number of Subdomain Nodes = 251 | |
| Number of Subdomain elementBoundaries Owned= 1818 | |
| Number of Subdomain elementBoundaries = 1954 | |
| Number of Subdomain Edges Owned= 989 | |
| Number of Subdomain Edges = 1311 | |
| Finished partitioning | |
| *** Global *** | |
| Number of tetrahedra : 6000 | |
| Number of triangles : 12600 | |
| Number of edges : 7930 | |
| Number of nodes : 1331 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| *** Local *** | |
| Number of tetrahedra : 893 | |
| Number of triangles : 1954 | |
| Number of edges : 1311 | |
| Number of nodes : 251 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| Setting up MultilevelTransport for poisson_3d_c0p2pe8 | |
| Building Transport for each mesh | |
| Generating Trial Space | |
| Generating Test Space | |
| Allocating u | |
| [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [1]PETSC ERROR: Arguments are incompatible! | |
| [1]PETSC ERROR: Local size 1116 cannot be larger than global size 0! | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [1]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [1]PETSC ERROR: See docs/index.html for manual pages. | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [1]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [1]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [1]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [1]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [1]PETSC ERROR: to get more information on the crash. | |
| [1]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [1]PETSC ERROR: Signal received! | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [1]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [1]PETSC ERROR: See docs/index.html for manual pages. | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [1]PETSC ERROR: Libraries linked from /usr/local[5]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [5]PETSC ERROR: Arguments are incompatible! | |
| [5]PETSC ERROR: Local size 1106 cannot be larger than global size 0! | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [5]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [5]PETSC ERROR: See docs/index.html for manual pages. | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [5]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [5]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [5]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [5]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [5]PETSC ERROR: to get more information on the crash. | |
| [5]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [5]PETSC ERROR: Signal received! | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [5]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [5]PETSC ERROR: See docs/index.html for manual pages. | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [5]PETSC ERROR: Libraries linked from /usr/local[2]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [2]PETSC ERROR: Arguments are incompatible! | |
| [2]PETSC ERROR: Local size 1176 cannot be larger than global size 0! | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [2]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [2]PETSC ERROR: See docs/index.html for manual pages. | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [2]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [2]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [2]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --w/u/aron/old/proteus/diamond/lib | |
| [1]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [1]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 | |
| [7]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [7]PETSC ERROR: Arguments are incompatible! | |
| [7]PETSC ERROR: Local size 1154 cannot be larger than global size 0! | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [7]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [7]PETSC ERROR: See docs/index.html for manual pages. | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [7]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [7]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [7]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --w[6]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [6]PETSC ERROR: Arguments are incompatible! | |
| [6]PETSC ERROR: Local size 1144 cannot be larger than global size 0! | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [6]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [6]PETSC ERROR: See docs/index.html for manual pages. | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [6]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [6]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [6]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [6]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [6]PETSC ERROR: to get more information on the crash. | |
| [6]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [6]PETSC ERROR: Signal received! | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [6]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [6]PETSC ERROR: See docs/index.html for manual pages. | |
| [6]PETSC ERROR: ---------------------------------------------------------/u/aron/old/proteus/diamond/lib | |
| [5]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [5]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 5 | |
| ith-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [2]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [2]PETSC ERROR: Try option -start_in_debugger or -on_erroith-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [7]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [7]PETSC ERROR: to get more information on the crash. | |
| [7]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [7]PETSC ERROR: Signal received! | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [7]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [7]PETSC ERROR: See docs/index.html for manual pages. | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [7]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [7]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [7]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 7 | |
| --------------- | |
| [6]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [6]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [6]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [6]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 6 | |
| r_attach_debugger | |
| [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [2]PETSC ERROR: to get more information on the crash. | |
| [2]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [2]PETSC ERROR: Signal received! | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [2]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [2]PETSC ERROR: See docs/index.html for manual pages. | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [2]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [2]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [2]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2 | |
| --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: Arguments are incompatible! | |
| [3]PETSC ERROR: Local size 1304 cannot be larger than global size 0! | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [3]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [3]PETSC ERROR: See docs/index.html for manual pages. | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [3]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [3]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [3]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [3]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [3]PETSC ERROR: to get more information on the crash. | |
| [3]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: Signal received! | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [3]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [3]PETSC ERROR: See docs/index.html for manual pages. | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [3]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [3]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [3]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hy[4]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [4]PETSC ERROR: Arguments are incompatible! | |
| [4]PETSC ERROR: Local size 1105 cannot be larger than global size 0! | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [4]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [4]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [4]PETSC ERROR: See docs/index.html for manual pages. | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [4]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [4]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [4]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --wpre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 | |
| ith-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [4]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [4]PETSC ERROR: to get more information on the crash. | |
| [4]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [4]PETSC ERROR: Signal received! | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [4]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [4]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [4]PETSC ERROR: See docs/index.html for manual pages. | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [4]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [4]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [4]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 4 | |
| [0]PETSC ERROR: Arguments are incompatible! | |
| [0]PETSC ERROR: Local size 1156 cannot be larger than global size 0! | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [0]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [0]PETSC ERROR: See docs/index.html for manual pages. | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [0]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [0]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [0]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [0]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [0]PETSC ERROR: to get more information on the crash. | |
| [0]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [0]PETSC ERROR: Signal received! | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [0]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [0]PETSC ERROR: See docs/index.html for manual pages. | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:38 2013 | |
| [0]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [0]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [0]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 | |
| rank 1 in job 1 r25i3n13_36256 caused collective abort of all ranks | |
| exit status of rank 1: killed by signal 9 | |
| testing poisson on 2 nodes (16 mpi tasks) | |
| Initializing NumericalSolution for poisson_3d_c0p1pe16 | |
| System includes: | |
| poisson_3d_c0p1pe16 | |
| Setting Archiver(s) | |
| Setting up MultilevelMesh | |
| Building one multilevel mesh for all models | |
| Generating mesh for poisson_3d_c0p1pe16 | |
| Building 11 x 11 x 11 rectangular mesh for poisson_3d_c0p1pe16 | |
| Generating tetrahedral mesh | |
| Partitioning mesh among 16 processors using partitioningType = 1 | |
| Number of Subdomain Elements Owned= 490 | |
| Number of Subdomain Elements = 490 | |
| Number of Subdomain Nodes Owned= 85 | |
| Number of Subdomain Nodes = 148 | |
| Number of Subdomain elementBoundaries Owned= 990 | |
| Number of Subdomain elementBoundaries = 1086 | |
| Number of Subdomain Edges Owned= 495 | |
| Number of Subdomain Edges = 743 | |
| Finished partitioning | |
| *** Global *** | |
| Number of tetrahedra : 6000 | |
| Number of triangles : 12600 | |
| Number of edges : 7930 | |
| Number of nodes : 1331 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| *** Local *** | |
| Number of tetrahedra : 490 | |
| Number of triangles : 1086 | |
| Number of edges : 743 | |
| Number of nodes : 148 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| Numerical Solution Sparse diffusion information key (0, 0) = (array([0, 3, 6, 9], dtype=int32), array([0, 1, 2, 0, 1, 2, 0, 1, 2], dtype=int32)) | |
| Setting up MultilevelTransport for poisson_3d_c0p1pe16 | |
| Building Transport for each mesh | |
| Generating Trial Space | |
| Generating Test Space | |
| Allocating u | |
| Allocating phi | |
| Setting Boundary Conditions | |
| Setting Boundary Conditions-1 | |
| Setting Boundary Conditions-2 | |
| Setting Boundary Conditions-2a | |
| Setting Boundary Conditions-3 | |
| Setting Boundary Conditions-4 | |
| Initializing OneLevelTransport | |
| Sparse diffusion information key (0, 0) = (array([0, 3, 6, 9], dtype=int32), array([0, 1, 2, 0, 1, 2, 0, 1, 2], dtype=int32)) | |
| Shallow copy of trial shape is being used for test shape w | |
| Shallow copy of trial shape is being used for test shape grad(w) | |
| Shallow copy of trial shape is being used for test shape w | |
| Updating local to global mappings | |
| Building time integration object | |
| Calculating numerical quadrature formulas | |
| Element Quadrature | |
| Element Boundary Quadrature | |
| Global Exterior Element Boundary Quadrature | |
| Allocating residual and solution vectors | |
| Allocating Jacobian | |
| Building sparse matrix structure | |
| Allocating parallel storage | |
| Allocating ghosted parallel vectors on rank 0 | |
| Allocating un-ghosted parallel vectors on rank 0 | |
| Allocating matrix on rank 0 | |
| ParMat_petsc4py comm.rank= 0 blockSize = 1 par_n= 85 par_N=1331 par_nghost=63 par_jacobian.getSizes()= ((85, 1331), (85, 1331)) | |
| Building Mesh Transfers | |
| Setting poisson_3d_c0p1pe16 stepController to proteus.StepControl.SC_base | |
| Setting up MultilevelLinearSolver forpoisson_3d_c0p1pe16 | |
| multilevelLinearSolverChooser type= proteus.LinearSolvers.KSP_petsc4py | |
| Setting up MultilevelNonLinearSolver for poisson_3d_c0p1pe16 | |
| Finished setting up models and solvers | |
| Setting up SimTools for poisson_3d_c0p1pe16 | |
| Building tnList from model = poisson_3d_c0p1pe16 nDTout = 1 | |
| Time sequence[0.0, 1.0] | |
| Setting poisson_3d_c0p1pe16 systemStepController to object of type proteus.SplitOperator.Sequential_MinModelStep | |
| Finished NumericalSolution initialization | |
| Setting initial conditions | |
| No initial conditions provided for model poisson_3d_c0p1pe16 | |
| Attaching models and running spin-up step if requested | |
| Archiving initial conditions | |
| Writing initial mesh for model = poisson_3d_c0p1pe16 | |
| Writing initial conditions for model = poisson_3d_c0p1pe16 | |
| Estimating initial time derivative and initializing time history for model poisson_3d_c0p1pe16 | |
| Choosing initial time step for model poisson_3d_c0p1pe16 | |
| Initializing time step on model poisson_3d_c0p1pe16 to dt = 1.00000e+00 | |
| Initializing time history for model step controller | |
| Auxiliary variable calculations for model poisson_3d_c0p1pe16 | |
| Syncing Archive | |
| Initializing time step on system Default System to dt = 1.00000e+00 | |
| Initializing step sequence for system Default System to [(1.0, <proteus.Transport.MultilevelTransport instance at 0x1a09f80>)] | |
| Starting time stepping | |
| ============================================================== | |
| Solving over interval [ 0.00000e+00, 1.00000e+00] | |
| ============================================================== | |
| ===========================================================dt system orig1.0 | |
| =========================================================dt system final1.0 | |
| System time step t= 1.00000e+00, dt= 1.00000e+00 | |
| Split operator iteration 0 | |
| Model: poisson_3d_c0p1pe16 | |
| Fractional step 1.00000e+00 for model poisson_3d_c0p1pe16 | |
| Step exact called for model poisson_3d_c0p1pe16 | |
| StepControl base stepExact t_model= 1.0 tOut= 1.0 t_model_last= 0.0 dt_model= 1.0 setting to 1.0 | |
| Model step t= 1.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe16 | |
| Model substep t= 1.00000e+00 for model poisson_3d_c0p1pe16 | |
| Model substep t= 1.00000e+00 for model poisson_3d_c0p1pe16 model.timeIntegration.t= 1.00000e+00 | |
| Newton it 0 norm(r) = 3.84901e+00 norm(r)/(rtol*norm(r0)+atol) = 3.84901e+08 test=r | |
| before ksp.rtol= 0.0 ksp.atol= 1e-10 ksp.converged= False ksp.its= 0 ksp.norm= 0.0 | |
| KSP it 0 norm(r) = 3.849005e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 1 norm(r) = 7.176695e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 2 norm(r) = 5.699677e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 3 norm(r) = 4.730157e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 4 norm(r) = 3.516414e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 5 norm(r) = 2.611755e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 6 norm(r) = 1.957095e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 7 norm(r) = 1.490455e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 8 norm(r) = 1.056244e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 9 norm(r) = 7.202753e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 10 norm(r) = 4.184510e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 11 norm(r) = 2.292017e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 12 norm(r) = 1.299686e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 13 norm(r) = 7.916385e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 14 norm(r) = 4.037266e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 15 norm(r) = 2.101447e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 16 norm(r) = 1.103590e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 17 norm(r) = 6.565074e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 18 norm(r) = 3.803639e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 19 norm(r) = 2.090142e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 20 norm(r) = 1.205232e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 21 norm(r) = 6.824786e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 22 norm(r) = 4.042128e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 23 norm(r) = 2.683637e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 24 norm(r) = 1.831854e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 25 norm(r) = 1.128492e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 26 norm(r) = 6.616554e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 27 norm(r) = 3.697289e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 28 norm(r) = 2.140191e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 29 norm(r) = 1.222577e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 30 norm(r) = 7.140607e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 30 norm(r) = 7.140607e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 31 norm(r) = 4.583278e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 32 norm(r) = 2.723923e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 33 norm(r) = 1.546368e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 34 norm(r) = 7.639189e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 35 norm(r) = 4.216969e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 36 norm(r) = 2.378940e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 37 norm(r) = 1.446263e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 38 norm(r) = 8.747652e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 39 norm(r) = 5.506168e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 40 norm(r) = 3.639323e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 41 norm(r) = 2.429702e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 42 norm(r) = 1.626551e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 43 norm(r) = 1.020947e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 44 norm(r) = 6.258828e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 45 norm(r) = 3.616830e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 46 norm(r) = 2.077706e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 47 norm(r) = 1.233174e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 48 norm(r) = 8.013568e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 49 norm(r) = 5.217615e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 50 norm(r) = 3.248734e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 51 norm(r) = 2.092064e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 52 norm(r) = 1.237437e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 53 norm(r) = 7.317590e-11; atol=1.000000e-10 rtol=0.000000e+00 | |
| after ksp.rtol= 0.0 ksp.atol= 1e-10 ksp.converged= True ksp.its= 53 ksp.norm= 3.86808793682e-11 reason = 4 | |
| Newton it 1 norm(r) = 7.31747e-11 norm(r)/(rtol*norm(r0)+atol) = 7.31747e-03 | |
| SO_base modelStepTaken for model= poisson_3d_c0p1pe16 t_system_last= 0.0 t_model_last= 0.0 setting to t_stepSequence= 1.0 | |
| Step Taken, t_stepSequence= 1.0 Model step t= 1.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe16 | |
| SplitOperator_Min choose_dt_system t_system_last= 1.0 dt_system= 1.0 t_system= 2.0 | |
| Step Taken, System time step t= 2.00000e+00, dt= 1.00000e+00 | |
| Step Taken, Model step t= 2.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe16 | |
| Writing mesh header for model = poisson_3d_c0p1pe16 at time t=1.0 | |
| Writing solution for model = poisson_3d_c0p1pe16 | |
| Syncing Archive | |
| Syncing Archive | |
| Finished calculating solution | |
| Closing solution archive for poisson_3d_c0p1pe16 | |
| Closing Archive | |
| Done Closing Archive | |
| Gathering Archive | |
| Done Gathering Archive | |
| Initializing NumericalSolution for poisson_3d_c0p2pe16 | |
| System includes: | |
| poisson_3d_c0p2pe16 | |
| Setting Archiver(s) | |
| Setting up MultilevelMesh | |
| Building one multilevel mesh for all models | |
| Generating mesh for poisson_3d_c0p2pe16 | |
| Building 11 x 11 x 11 rectangular mesh for poisson_3d_c0p2pe16 | |
| Generating tetrahedral mesh | |
| Partitioning mesh among 16 processors using partitioningType = 1 | |
| Number of Subdomain Elements Owned= 490 | |
| Number of Subdomain Elements = 490 | |
| Number of Subdomain Nodes Owned= 85 | |
| Number of Subdomain Nodes = 148 | |
| Number of Subdomain elementBoundaries Owned= 990 | |
| Number of Subdomain elementBoundaries = 1086 | |
| Number of Subdomain Edges Owned= 495 | |
| Number of Subdomain Edges = 743 | |
| Finished partitioning | |
| *** Global *** | |
| Number of tetrahedra : 6000 | |
| Number of triangles : 12600 | |
| Number of edges : 7930 | |
| Number of nodes : 1331 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| *** Local *** | |
| Number of tetrahedra : 490 | |
| Number of triangles : 1086 | |
| Number of edges : 743 | |
| Number of nodes : 148 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| Setting up MultilevelTransport for poisson_3d_c0p2pe16 | |
| Building Transport for each mesh | |
| Generating Trial Space | |
| Generating Test Space | |
| [1]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [1]PETSC ERROR: Arguments are incompatible! | |
| [1]PETSC ERROR: Local size 552 cannot be larger than global size 0! | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [1]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [1]PETSC ERROR: See docs/index.html for manual pages. | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [1]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [1]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [1]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [1]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [1]PETSC ERROR: to get more information on the crash. | |
| [1]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [1]PETSC ERROR: Signal received! | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [1]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [1]PETSC ERROR: See docs/index.html for manual pages. | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [1]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [1]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [1]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 | |
| [2]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [2]PETSC ERROR: Arguments are incompatible! | |
| [2]PETSC ERROR: Local size 534 cannot be larger than global size 0! | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [2]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [2]PETSC ERROR: See docs/index.html for manual pages. | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [2]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [2]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [2]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --wi[14]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [14]PETSC ERROR: Arguments are incompatible! | |
| [14]PETSC ERROR: Local size 486 cannot be larger than global size 0! | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [14]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [14]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [14]PETSC ERROR: See docs/index.html for manual pages. | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [14]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [14]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [14]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [14]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [14]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [14]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[14]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [14]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [14]PETSC ERROR: to get more information on the crash. | |
| [14]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [14]PETSC ERROR: Signal received! | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [14]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [14]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [14]PETSC ERROR: See docs/index.html for manual pages. | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [14]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [14]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [14]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 14 | |
| [13]PETSC ERROR: --------------------- Error Message ------------------------------[15]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [15]PETSC ERROR: Arguments are incompatible! | |
| [15]PETSC ERROR: Local size 546 cannot be larger than global size 0! | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [15]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [15]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [15]PETSC ERROR: See docs/index.html for manual pages. | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [15]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [15]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [15]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [15]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [15]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [15]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [15]PETSC ERROR: to get more information on the crash. | |
| [15]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [15]PETSC ERROR: Signal received! | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [15]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [15]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [15]PETSC ERROR: See docs/index.html for manual pages. | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [15]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [15]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [15]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 15 | |
| [9]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [9]PETSC ERROR: Arguments are incompatible! | |
| [9]PETSC ERROR: Local size 560 cannot be larger than global size 0! | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [9]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [9]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [9]PETSC ERROR: See docs/index.html for manual pages. | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [9]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [9]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [9]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 ------ | |
| [13]PETSC ERROR: Arguments are incompatible! | |
| [13]PETSC ERROR: Local size 548 cannot be larger than global size 0! | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [13]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [13]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [13]PETSC ERROR: See docs/index.html for manual pages. | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [13]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [13]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [13]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --downth-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [2]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [2]PETSC ERROR: Try option -start_in_debugger or -on_errorload-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [13]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [13]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [13]PETSC ERROR: or see http://www.mcs.anl.gov/pAllocating u | |
| etsc/documentation/faq.html#valgrind[13]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [13]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [13]PETSC ERROR: to get more information on the crash. | |
| [13]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [13]PETSC ERROR: Signal received! | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [13]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [13]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [13]PETSC ERROR: See docs/index.html for manual pages. | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [13]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [13]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [13]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 13 | |
| [5]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [5]PETSC ERROR: Arguments are incompatible! | |
| [5]PETSC ERROR: Local size 596 ca--download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [9]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [9]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [9]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [9]PETSC ERROR: to get more information on the crash. | |
| [9]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [9]PETSC ERROR: Signal received! | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [9]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [9]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [9]PETSC ERROR: See docs/index.html for manual pages. | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [9]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [9]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [9]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 9 | |
| [4]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [4]PETSC ERROR: Arguments are incompatible! | |
| [4]PETSC ERROR: Local size 664 cannot be larger than global size 0! | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [4]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [4]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [4]PETSC ERROR: See docs/index.html for manual pages. | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [4]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [4]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [4]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [4]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errnnot be larger than global size 0! | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [5]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [5]PETSC ERROR: See docs/index.html for manual pages. | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [5]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [5]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [5]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --wi_attach_debugger | |
| [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [2]PETSC ERROR: to get more information on the crash. | |
| [2]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [2]PETSC ERROR: Signal received! | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [2]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [2]PETSC ERROR: See docs/index.html for manual pages. | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [2]PETSC ERROR: Libraries linked from /usr/local/th-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [5]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [5]PETSC ERROR: Try option -start_in_debugger or -on_erroru/aron/old/proteus/diamond/lib | |
| [2]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [2]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2 | |
| _attach_debugger | |
| [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [5]PETSC ERROR: to get more information on the crash. | |
| [5]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [5]PETSC ERROR: Signal received! | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [5]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [5]PETSC ERROR: See docs/index.html for manual pages. | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [5]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [5]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [5]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-ors | |
| [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [4]PETSC ERROR: to get more information on the crash. | |
| [4]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [4]PETSC ERROR: Signal received! | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [4]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [4]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [4]PETSC ERROR: See docs/index.html for manual pages. | |
| [4]PETSC ERROR: ---------------------------------------------------------[3]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: Arguments are incompatible! | |
| [3]PETSC ERROR: Local size 680 cannot be larger than global size 0! | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [3]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [3]PETSC ERROR: See docs/index.html for manual pages. | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [3]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [3]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| --------------- | |
| [4]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [4]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [4]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [4]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI[7]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [7]PETSC ERROR: Arguments are incompatible! | |
| [7]PETSC ERROR: Local size 680 cannot be larger than global size 0! | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [7]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [7]PETSC ERROR: See docs/index.html for manual pages. | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [7]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [7]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [7]PETSC ERROR: [3]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [3]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [3]PETSC ERROR: ---------------------------------------------------------------[10]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [10]PETSC ERROR: Arguments are incompatible! | |
| [10]PETSC ERROR: Local size 596 cannot be larger than global size 0! | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [10]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [10]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [10]PETSC ERROR: See docs/index.html for manual pages. | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aroblas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 5 | |
| [11]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [11]PETSC ERROR: Arguments are incompatible! | |
| [11]PETSC ERROR: Local size 510 cannot be larger than global size 0! | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [11]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [11]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [11]PETSC ERROR: See docs/index.html for manual pages. | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [11]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [11]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [11]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=[6]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [6]PETSC ERROR: Arguments are incompatible! | |
| [6]PETSC ERROR: Local size 566 cannot be larger than global size 0! | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [6]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [6]PETSC ERROR: See docs/index.html for manual pages. | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [6]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [6]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [6]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --wimpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [11]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [11]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [11]PETSC ERROR: to get more information on the crash. | |
| [11]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [11]PETSC ERROR: Signal received! | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [11]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [11]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [11]PETSC ERROR: See docs/index.html for manual pages. | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [11]PETSC ERROR: Lith-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/din Thu Oct 24 07:54:52 2013 | |
| [10]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [10]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [10]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=_Abort(MPI_COMM_WORLD, 59) - process 4 | |
| Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [7]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [7]PETSC ERROR: to get more information on the crash. | |
| [7]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [7]PETSC ERROR: Signal received! | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [7]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [7]PETSC ERROR: See docs/index.html for manual pages. | |
| [7]PETSC ERROR: ------------------------------------------------------------------ | |
| [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [3]PETSC ERROR: to get more information on the crash. | |
| [3]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: Signal received! | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [3]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [3]PETSC ERROR: See docs/index.html for manual pages. | |
| [3]PETSC ERROR: -----------------------------------------mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [10]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [10]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[10]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [10]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [10]PETSC ERROR: to get more information on the crash. | |
| [10]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [10]PETSC ERROR: Signal received! | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [10]PETSC ERROR: See damond | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [6]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [6]PETSC ERROR: to get more information on the crash. | |
| [6]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [6]PETSC ERROR: Signal received! | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [6]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [6]PETSC ERROR: See docs/index.html for manual pages. | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [6]PETSC ERROR: Libraries linked from /usr/local/braries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [11]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [11]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 11 | |
| u/aron/old/proteus/diamond/lib | |
| [6]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [6]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 6 | |
| [12]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [12]PETSC ERROR: Arguments are incompatible! | |
| [12]PETSC ERROR: Local size 547 cannot be larger than global size 0! | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [12]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [12]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [12]PETSC ERROR: See docs/index.html for manual pages. | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [12]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [12]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [12]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petocs/changes/index.html for recent updates. | |
| [10]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [10]PETSC ERROR: See docs/index.html for manual pages. | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [10]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [10]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [10]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 10 | |
| --------------- | |
| [7]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [7]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [7]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [7]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 7 | |
| ------------------------------- | |
| [3]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [3]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [3]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [3]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 | |
| sc-dev/src/vec/vec/interface/vector.c | |
| [12]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [12]PETSC ERROR: to get more information on the crash. | |
| [12]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [12]PETSC ERROR: Signal received! | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [12]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [12]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [12]PETSC ERROR: See docs/index.html for manual pages. | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [12]PETSC ERROR: Li[8]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [8]PETSC ERROR: Arguments are incompatible! | |
| [8]PETSC ERROR: Local size 616 cannot be larger than global size 0! | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [8]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [8]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [8]PETSC ERROR: See docs/index.html for manual pages. | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [8]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [8]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [8]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [8]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [8]PETSC ERROR: to get more information on the crash. | |
| [8]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [8]PETSC ERROR: Signal received! | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [8]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [8]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [8]PETSC ERROR: See docs/index.html for manual pages. | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:54:52 2013 | |
| [8]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [8]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [8]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 8 | |
| [0]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [0]PETSC ERROR: Arguments are incompatible! | |
| [0]PETSC ERROR: Local size 580 cannot be larger than global size 0! | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [0]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [0]PETSC ERROR: See docs/index.html for manual pages. | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [0]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [0]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [0]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [0]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [0]PETSC ERROR: to get more information on the crash. | |
| [0]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [0]PETSC ERROR: Signal received! | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [0]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [0]PETSC ERROR: See docs/index.html for manual pages. | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:54:52 2013 | |
| [0]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [0]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [0]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 | |
| braries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [12]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [12]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 12 | |
| rank 13 in job 1 r25i3n13_52905 caused collective abort of all ranks | |
| exit status of rank 13: killed by signal 9 | |
| testing poisson on 3 nodes (24 mpi tasks) | |
| Initializing NumericalSolution for poisson_3d_c0p1pe24 | |
| System includes: | |
| poisson_3d_c0p1pe24 | |
| Setting Archiver(s) | |
| Setting up MultilevelMesh | |
| Building one multilevel mesh for all models | |
| Generating mesh for poisson_3d_c0p1pe24 | |
| Building 11 x 11 x 11 rectangular mesh for poisson_3d_c0p1pe24 | |
| Generating tetrahedral mesh | |
| Partitioning mesh among 24 processors using partitioningType = 1 | |
| Number of Subdomain Elements Owned= 264 | |
| Number of Subdomain Elements = 264 | |
| Number of Subdomain Nodes Owned= 55 | |
| Number of Subdomain Nodes = 97 | |
| Number of Subdomain elementBoundaries Owned= 547 | |
| Number of Subdomain elementBoundaries = 608 | |
| Number of Subdomain Edges Owned= 309 | |
| Number of Subdomain Edges = 440 | |
| Finished partitioning | |
| *** Global *** | |
| Number of tetrahedra : 6000 | |
| Number of triangles : 12600 | |
| Number of edges : 7930 | |
| Number of nodes : 1331 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| *** Local *** | |
| Number of tetrahedra : 264 | |
| Number of triangles : 608 | |
| Number of edges : 440 | |
| Number of nodes : 97 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| Numerical Solution Sparse diffusion information key (0, 0) = (array([0, 3, 6, 9], dtype=int32), array([0, 1, 2, 0, 1, 2, 0, 1, 2], dtype=int32)) | |
| Setting up MultilevelTransport for poisson_3d_c0p1pe24 | |
| Building Transport for each mesh | |
| Generating Trial Space | |
| Generating Test Space | |
| Allocating u | |
| Allocating phi | |
| Setting Boundary Conditions | |
| Setting Boundary Conditions-1 | |
| Setting Boundary Conditions-2 | |
| Setting Boundary Conditions-2a | |
| Setting Boundary Conditions-3 | |
| Setting Boundary Conditions-4 | |
| Initializing OneLevelTransport | |
| Sparse diffusion information key (0, 0) = (array([0, 3, 6, 9], dtype=int32), array([0, 1, 2, 0, 1, 2, 0, 1, 2], dtype=int32)) | |
| Shallow copy of trial shape is being used for test shape w | |
| Shallow copy of trial shape is being used for test shape grad(w) | |
| Shallow copy of trial shape is being used for test shape w | |
| Updating local to global mappings | |
| Building time integration object | |
| Calculating numerical quadrature formulas | |
| Element Quadrature | |
| Element Boundary Quadrature | |
| Global Exterior Element Boundary Quadrature | |
| Allocating residual and solution vectors | |
| Allocating Jacobian | |
| Building sparse matrix structure | |
| Allocating parallel storage | |
| Allocating ghosted parallel vectors on rank 0 | |
| Allocating un-ghosted parallel vectors on rank 0 | |
| Allocating matrix on rank 0 | |
| ParMat_petsc4py comm.rank= 0 blockSize = 1 par_n= 55 par_N=1331 par_nghost=42 par_jacobian.getSizes()= ((55, 1331), (55, 1331)) | |
| Building Mesh Transfers | |
| Setting poisson_3d_c0p1pe24 stepController to proteus.StepControl.SC_base | |
| Setting up MultilevelLinearSolver forpoisson_3d_c0p1pe24 | |
| multilevelLinearSolverChooser type= proteus.LinearSolvers.KSP_petsc4py | |
| Setting up MultilevelNonLinearSolver for poisson_3d_c0p1pe24 | |
| Finished setting up models and solvers | |
| Setting up SimTools for poisson_3d_c0p1pe24 | |
| Building tnList from model = poisson_3d_c0p1pe24 nDTout = 1 | |
| Time sequence[0.0, 1.0] | |
| Setting poisson_3d_c0p1pe24 systemStepController to object of type proteus.SplitOperator.Sequential_MinModelStep | |
| Finished NumericalSolution initialization | |
| Setting initial conditions | |
| No initial conditions provided for model poisson_3d_c0p1pe24 | |
| Attaching models and running spin-up step if requested | |
| Archiving initial conditions | |
| Writing initial mesh for model = poisson_3d_c0p1pe24 | |
| Writing initial conditions for model = poisson_3d_c0p1pe24 | |
| Estimating initial time derivative and initializing time history for model poisson_3d_c0p1pe24 | |
| Choosing initial time step for model poisson_3d_c0p1pe24 | |
| Initializing time step on model poisson_3d_c0p1pe24 to dt = 1.00000e+00 | |
| Initializing time history for model step controller | |
| Auxiliary variable calculations for model poisson_3d_c0p1pe24 | |
| Syncing Archive | |
| Initializing time step on system Default System to dt = 1.00000e+00 | |
| Initializing step sequence for system Default System to [(1.0, <proteus.Transport.MultilevelTransport instance at 0x1a44f80>)] | |
| Starting time stepping | |
| ============================================================== | |
| Solving over interval [ 0.00000e+00, 1.00000e+00] | |
| ============================================================== | |
| ===========================================================dt system orig1.0 | |
| =========================================================dt system final1.0 | |
| System time step t= 1.00000e+00, dt= 1.00000e+00 | |
| Split operator iteration 0 | |
| Model: poisson_3d_c0p1pe24 | |
| Fractional step 1.00000e+00 for model poisson_3d_c0p1pe24 | |
| Step exact called for model poisson_3d_c0p1pe24 | |
| StepControl base stepExact t_model= 1.0 tOut= 1.0 t_model_last= 0.0 dt_model= 1.0 setting to 1.0 | |
| Model step t= 1.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe24 | |
| Model substep t= 1.00000e+00 for model poisson_3d_c0p1pe24 | |
| Model substep t= 1.00000e+00 for model poisson_3d_c0p1pe24 model.timeIntegration.t= 1.00000e+00 | |
| Newton it 0 norm(r) = 3.84901e+00 norm(r)/(rtol*norm(r0)+atol) = 3.84901e+08 test=r | |
| before ksp.rtol= 0.0 ksp.atol= 1e-10 ksp.converged= False ksp.its= 0 ksp.norm= 0.0 | |
| KSP it 0 norm(r) = 3.849005e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 1 norm(r) = 6.962530e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 2 norm(r) = 5.770303e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 3 norm(r) = 4.907999e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 4 norm(r) = 3.746867e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 5 norm(r) = 2.908832e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 6 norm(r) = 2.178980e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 7 norm(r) = 1.652810e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 8 norm(r) = 1.236078e+00; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 9 norm(r) = 8.516962e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 10 norm(r) = 5.340545e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 11 norm(r) = 3.107084e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 12 norm(r) = 1.774763e-01; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 13 norm(r) = 9.873741e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 14 norm(r) = 5.593843e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 15 norm(r) = 3.235000e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 16 norm(r) = 1.947527e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 17 norm(r) = 1.097269e-02; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 18 norm(r) = 6.346852e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 19 norm(r) = 3.873471e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 20 norm(r) = 2.314133e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 21 norm(r) = 1.440932e-03; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 22 norm(r) = 9.715407e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 23 norm(r) = 6.250202e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 24 norm(r) = 3.963322e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 25 norm(r) = 2.441664e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 26 norm(r) = 1.355942e-04; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 27 norm(r) = 7.328949e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 28 norm(r) = 3.937448e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 29 norm(r) = 2.070506e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 30 norm(r) = 1.215470e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 30 norm(r) = 1.215470e-05; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 31 norm(r) = 7.695501e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 32 norm(r) = 4.647420e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 33 norm(r) = 2.703930e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 34 norm(r) = 1.650358e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 35 norm(r) = 1.051686e-06; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 36 norm(r) = 6.874738e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 37 norm(r) = 4.101671e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 38 norm(r) = 2.810556e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 39 norm(r) = 2.008307e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 40 norm(r) = 1.270352e-07; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 41 norm(r) = 8.043387e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 42 norm(r) = 5.140955e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 43 norm(r) = 3.386659e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 44 norm(r) = 2.307754e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 45 norm(r) = 1.577433e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 46 norm(r) = 1.085173e-08; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 47 norm(r) = 7.025869e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 48 norm(r) = 4.345470e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 49 norm(r) = 2.471007e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 50 norm(r) = 1.292181e-09; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 51 norm(r) = 7.836329e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 52 norm(r) = 4.741454e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 53 norm(r) = 2.757833e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 54 norm(r) = 1.532828e-10; atol=1.000000e-10 rtol=0.000000e+00 | |
| KSP it 55 norm(r) = 8.586272e-11; atol=1.000000e-10 rtol=0.000000e+00 | |
| after ksp.rtol= 0.0 ksp.atol= 1e-10 ksp.converged= True ksp.its= 55 ksp.norm= 4.41352900818e-11 reason = 4 | |
| Newton it 1 norm(r) = 8.58662e-11 norm(r)/(rtol*norm(r0)+atol) = 8.58662e-03 | |
| SO_base modelStepTaken for model= poisson_3d_c0p1pe24 t_system_last= 0.0 t_model_last= 0.0 setting to t_stepSequence= 1.0 | |
| Step Taken, t_stepSequence= 1.0 Model step t= 1.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe24 | |
| SplitOperator_Min choose_dt_system t_system_last= 1.0 dt_system= 1.0 t_system= 2.0 | |
| Step Taken, System time step t= 2.00000e+00, dt= 1.00000e+00 | |
| Step Taken, Model step t= 2.00000e+00, dt= 1.00000e+00 for model poisson_3d_c0p1pe24 | |
| Writing mesh header for model = poisson_3d_c0p1pe24 at time t=1.0 | |
| Writing solution for model = poisson_3d_c0p1pe24 | |
| Syncing Archive | |
| Syncing Archive | |
| Finished calculating solution | |
| Closing solution archive for poisson_3d_c0p1pe24 | |
| Closing Archive | |
| Done Closing Archive | |
| Gathering Archive | |
| Done Gathering Archive | |
| Initializing NumericalSolution for poisson_3d_c0p2pe24 | |
| System includes: | |
| poisson_3d_c0p2pe24 | |
| Setting Archiver(s) | |
| Setting up MultilevelMesh | |
| Building one multilevel mesh for all models | |
| Generating mesh for poisson_3d_c0p2pe24 | |
| Building 11 x 11 x 11 rectangular mesh for poisson_3d_c0p2pe24 | |
| Generating tetrahedral mesh | |
| Partitioning mesh among 24 processors using partitioningType = 1 | |
| Number of Subdomain Elements Owned= 264 | |
| Number of Subdomain Elements = 264 | |
| Number of Subdomain Nodes Owned= 55 | |
| Number of Subdomain Nodes = 97 | |
| Number of Subdomain elementBoundaries Owned= 547 | |
| Number of Subdomain elementBoundaries = 608 | |
| Number of Subdomain Edges Owned= 309 | |
| Number of Subdomain Edges = 440 | |
| Finished partitioning | |
| *** Global *** | |
| Number of tetrahedra : 6000 | |
| Number of triangles : 12600 | |
| Number of edges : 7930 | |
| Number of nodes : 1331 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| *** Local *** | |
| Number of tetrahedra : 264 | |
| Number of triangles : 608 | |
| Number of edges : 440 | |
| Number of nodes : 97 | |
| max(sigma_k) : 1 | |
| min(h_k) : 0 | |
| Setting up MultilevelTransport for poisson_3d_c0p2pe24 | |
| Building Transport for each mesh | |
| Generating Trial Space | |
| Generating Test Space | |
| Allocating u | |
| [0]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [0]PETSC ERROR: Arguments are incompatible! | |
| [0]PETSC ERROR: Local size 364 cannot be larger than global size 0! | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [0]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [0]PETSC ERROR: See docs/index.html for manual pages. | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [1]PETSC ERROR: Arguments are incompatible! | |
| [1]PETSC ERROR: Local size 354 cannot be larger than global size 0! | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [1]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [1]PETSC ERROR: See docs/index.html for manual pages. | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [1]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [1]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [1]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [1]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [1]PETSC ERROR: Try option -start_in_debugger or -on_errortest_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [0]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [0]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [0]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [0]PE[3]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: Arguments are incompatible! | |
| [3]PETSC ERROR: Local size 384 cannot be larger than global size 0! | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [3]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [3]PETSC ERROR: See docs/index.html for manual pages. | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [3]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [3]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [3]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [3]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [1]PETSC ERROR: to get more information on the crash. | |
| [1]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [1]PETSC ERROR: Signal received! | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [1]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [1]PETSC ERROR: See docs/index.html for manual pages. | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [1]PETSC ERROR: Libraries linked from /usr/local/TSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [0]PETSC ERROR: to get more information on the crash. | |
| [0]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [0]PETSC ERROR: Signal received! | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [0]PETSC ERROR: See docs/cha_attach_debugger | |
| [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [3]PETSC ERROR: to get more information on the crash. | |
| [3]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [3]PETSC ERROR: Signal received! | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [3]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [3]PETSC ERROR: See docs/index.html for manual pages. | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [3]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [3]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [3]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [3]PETSC ERROR: ------------------------------------------------------------------------ | |
| [3]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 | |
| u/aron/old/proteus/diamond/lib | |
| [1]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [1]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [1]PETSC ERROR: ------------------------------------------------------------------------ | |
| [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 | |
| [6]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [6]PETSC ERROR: Arguments are incompatible! | |
| [6]PETSC ERROR: Local size 412 cannot be larger than global size 0! | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [6]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [6]PETSC ERROR: See docs/index.html for manual pages. | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [6]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [6]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [6]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --winges/index.html for recent updates. | |
| [0]PETSC ERROR: [15]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [15]PETSC ERROR: Arguments are incompatible! | |
| [15]PETSC ERROR: Local size 348 cannot be larger than global size 0! | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [15]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [15]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [15]PETSC ERROR: See docs/index.html for manual pages. | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [15]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [15]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [15]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=[22]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [22]PETSC ERROR: Arguments are incompatible! | |
| [22]PETSC ERROR: Local size 360 cannot be larger than global size 0! | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [22]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [22]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [22]PETSC ERROR: See docs/index.html for manual pages. | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [22]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [22]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [22]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=[17]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [17]PETSC ERROR: Arguments are incompatible! | |
| [17]PETSC ERROR: Local size 364 cannot be larger than global size 0! | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [17]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [17]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [17]PETSC ERROR: See docs/index.html for manual pages. | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [17]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [17]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [17]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [17]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [17]PETSC ERROR: Try option -start_in_debmpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [15]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [15]PETSC ERROR: Try option -start_in_deb[2]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [2]PETSC ERROR: Arguments are incompatible! | |
| [2]PETSC ERROR: Local size 376 cannot be larger than global size 0! | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [2]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [2]PETSC ERROR: See docs/index.html for manual pages. | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [2]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [2]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [2]PETSC ERROR: th-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [6]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [6]PETSC ERROR: to get more information on the crash. | |
| [6]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [6]PETSC ERROR: Signal received! | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [6]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [6]PETSC ERROR: See docs/index.html for manual pages. | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [6]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [6]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [6]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [6]PETSC ERROR: ------------------------------------------------------------------------ | |
| [6]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 6 | |
| Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [2]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETugger or -on_error_attach_debugger | |
| [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [15]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [15]PETSC ERROR: to get more information on the crash. | |
| [15]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [15]PETSC ERROR: Signal received! | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [15]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [15]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [15]PETSC ERROR: See docs/index.html for manual pages. | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [15]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [15]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [15]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [15]PETSC ERROR: ------------------------------------------------------------------------ | |
| [15]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 15 | |
| [9]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [9]PETSC ERROR: Arguments are incompatible! | |
| [9]PETSC ERROR: Local size 432 cannot be larger than global size 0! | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [9]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [9]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [9]PETSC ERROR: See docs/index.html for manual pages. | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [9]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [9]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [9]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [9]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [9]PETSC ERROR: Try option -start_in_debugger or -on_error_ugger or -on_error_attach_debugger | |
| [17]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[17]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [17]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [17]PETSC ERROR: to get more information on the crash. | |
| [17]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [17]PETSC ERROR: Signal received! | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [17]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [17]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [17]PETSC ERROR: See docs/index.html for manual pages. | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [17]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [17]PETSC ERROR: ConfSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [2]PETSC ERROR: to get more information on the crash. | |
| [2]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [2]PETSC ERROR: Signal received! | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [2]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [2]PETSC ERROR: See docs/index.html for manual pages. | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [2]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [2]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [2]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [2]PETSC ERROR: ------------------------------------------------------------------------ | |
| [2]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPIigure run at Thu Oct 17 17:17:36 2013 | |
| [17]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [17]PETSC ERROR: ------------------------------------------------------------------------ | |
| [17]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 17 | |
| [8]PETSC ERROR: mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [22]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [22]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [22]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[22]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [22]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [22]PETSC ERROR: to get more information on the crash. | |
| [22]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [22]PETSC ERROR: Signal received! | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [22]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [22]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [22]PETSC ERROR: See docs/index.html for manual pages. | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [22]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [22]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [22]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [22]PETSC ERROR: ------------------------------------------------------------------------ | |
| [22]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 22 | |
| [10]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [10]PETSC ERROR: Arguments are incompatible! | |
| [10]PETSC ERROR: Local size 360 cannot be larger than global size 0! | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [10]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [10]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [10]PETSC ERROR: See docs/index.html for manual pages. | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [10]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [10]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [10]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-sup[13]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [13]PETSC ERROR: Arguments are incompatible! | |
| [13]PETSC ERROR: Local size 432 cannot be larger than global size 0! | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [13]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [13]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [13]PETSC ERROR: See docs/index.html for manual pages. | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [13]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [13]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [13]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=_Abort(MPI_COMM_WORLD, 59) - process 2 | |
| erlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [10]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [10]PETSC ERROR: or see http://www.mcs.anl.gov/p[4]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [4]PETSC ERROR: Arguments are incompatible! | |
| [4]PETSC ERROR: Local size 456 cannot be larger than global size 0! | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [4]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [4]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [4]PETSC ERROR: See docs/index.html for manual pages. | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [4]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [4]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [4]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --wi--------------------- Error Message ------------------------------------ | |
| [8]PETSC ERROR: Arguments are incompatible! | |
| [8]PETSC ERROR: Local size 352 cannot be larger than global size 0! | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [8]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [8]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [8]PETSC ERROR: See docs/index.html for manual pages. | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [8]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [8]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [8]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [8]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [13]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [13]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [13]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[13]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [13]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [13]PETSC ERROR: to get more information on the crash. | |
| [13]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [13]PETSC ERROR: Signal received! | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [13]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [13]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [13]PETSC ERROR: See docs/index.html for manual pages. | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [13]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [13]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [13]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [13]PETSC ERROR: ------------------------------------------------------------------------ | |
| [13]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 13 | |
| [12]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [12]PETSC ERROR: Arguments are incompatible! | |
| [12]PETSC ERROR: Local size 356 cannot be larger than global size 0! | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [12]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [12]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [12]PETSC ERROR: See docs/index.html for manual pages. | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [12]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [12]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [12]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [12]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [12]PETSC ERROR: or see http://www.mcs.anl.gov/p[19]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [19]PETSC ERROR: Arguments are incompatible! | |
| [19]PETSC ERROR: Local size 402 cannot be larger than global size 0! | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [19]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [19]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [19]PETSC ERROR: See docs/index.html for manual pages. | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [19]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [19]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [19]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=attach_debugger | |
| [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [9]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [9]PETSC ERROR: to get more information on the crash. | |
| [9]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [9]PETSC ERROR: Signal received! | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [9]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [9]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [9]PETSC ERROR: See docs/index.html for manual pages. | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [9]PETSC ERROR: Libraries linked from /usr/local/u/mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [19]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [19]PETSC ERROR: Try option -start_in_debaron/old/proteus/diamond/lib | |
| [9]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [9]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [9]PETSC ERROR: ------------------------------------------------------------------------ | |
| [9]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 9 | |
| ugger or -on_error_attach_debugger | |
| [19]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[19]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [19]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [19]PETSC ERROR: to get more information on the crash. | |
| [19]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [19]PETSC ERROR: Signal received! | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [19]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [19]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [19]PETSC ERROR: See docs/index.html for manual pages. | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [19]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [19]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| etsc/documentation/faq.html#valgrind[12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [12]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [12]PETSC ERROR: to get more information on the crash. | |
| [12]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [12]PETSC ERROR: Signal received! | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [12]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [12]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [12]PETSC ERROR: See docs/index.html for manual pages. | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [12]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [12]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [12]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [12]PETSC ERROR: ------------------------------------------------------------------------ | |
| [12]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 12 | |
| [5]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [5]PETSC ERROR: Arguments are incompatible! | |
| [5]PETSC ERROR: Local size 432 cannot be larger than global size 0! | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [5]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [5]PETSC ERROR: See docs/index.html for manual pages. | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [5]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [5]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [5]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --wi[23]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [23]PETSC ERROR: Arguments are incompatible! | |
| [23]PETSC ERROR: Local size 328 cannot be larger than global size 0! | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [23]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [23]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [23]PETSC ERROR: See docs/index.html for manual pages. | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [23]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [23]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [23]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [23]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [23]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [23]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[23]PETSC ERROR: or try http://valgrind.org on [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [8]PETSC ERROR: to get more information on the crash. | |
| [8]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [8]PETSC ERROR: Signal received! | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| etsc/documentation/faq.html#valgrind[10]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [10]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [10]PETSC ERROR: to get more information on the crash. | |
| [10]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [10]PETSC ERROR: Signal received! | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [10]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [10]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [10]PETSC ERROR: See docs/index.html for manual pages. | |
| [10]PETSC ERROR: ---------------------------------------[21]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [21]PETSC ERROR: Arguments are incompatible! | |
| [21]PETSC ERROR: Local size 343 cannot be larger than global size 0! | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [21]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [21]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [21]PETSC ERROR: See docs/index.html for manual pages. | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [21]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [21]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [21]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=--------------------------------- | |
| [10]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [10]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [10]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [10]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [10]PETSC ERROR: ------------------------------------------------------------------------ | |
| [10]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 10 | |
| mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [21]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [21]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [21]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[21]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [21]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [21]PETSC ERROR: to get more information on the crash. | |
| [21]PETSC ERROR: ---GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [23]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [23]PETSC ERROR: to get more information on the crash. | |
| [23]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [23]PETSC ERROR: Signal received! | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [23]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [23]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [23]PETSC ERROR: See docs/index.html for manual pages. | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [23]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [23]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [23]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [23]PETSC ERROR: ------------------------------------------------------------------------ | |
| [23]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 23 | |
| [11]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [11]PETSC ERROR: Arguments are incompatible! | |
| [11]PETSC ERROR: Local size 456 cannot be larger than global size 0! | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [11]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [11]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [11]PETSC ERROR: See docs/index.html for manual pages. | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [11]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [11]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [11]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --downth-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [5]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [5]PETSC ERROR: Try option -start_in_debugger or -on_errorload-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [11]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [11]PETSC ERROR: conf------------------ Error Message ------------------------------------ | |
| [21]PETSC ERROR: Signal received! | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [21]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [21]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [21]PETSC ERROR: See docs/index.html for manual pages. | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [21]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [21]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [21]PETSC ERROR: Configure options --with-deb[8]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [8]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [8]PETSC ERROR: [18]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [18]PETSC ERROR: Arguments are incompatible! | |
| [18]PETSC ERROR: Local size 400 cannot be larger than global size 0! | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [18]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [18]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [18]PETSC ERROR: See docs/index.html for manual pages. | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [18]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [18]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [18]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=See docs/faq.html for hints about trouble shooting. | |
| mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [18]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [18]PETSC ERROR: Try option -start_in_deb[7]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [7]PETSC ERROR: Arguments are incompatible! | |
| [7]PETSC ERROR: Local size 424 cannot be larger than global size 0! | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [7]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [7]PETSC ERROR: See docs/index.html for manual pages. | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [7]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [7]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [7]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [4]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [4]PETSC ERROR: Try option -start_in_debugger or -on_error[19]PETSC ERROR: Configure optioigure using --with-debugging=yes, recompile, link, and run | |
| [11]PETSC ERROR: to get more information on the crash. | |
| [11]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [11]PETSC ERROR: Signal received! | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [11]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [11]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [11]PETSC ERROR: See docs/index.html for manual pages. | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [11]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [11]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [11]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [11]PETSC ERROR: ------------------------------------------------------------------------ | |
| [11]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 11 | |
| _attach_debugger | |
| [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [5]PETSC ERROR: to get more information on the crash. | |
| [5]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [5]PETSC ERROR: Signal received! | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [5]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [5]PETSC ERROR: See docs/index.html for manual pages. | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [5]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [5]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [5]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [5]PETSC ERROR: ------------------------------------------------------------------------ | |
| [5]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 5 | |
| ns --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [19]PETSC ERROR: ------------------------------------------------------------------------ | |
| [19]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 19 | |
| [20]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [20]PETSC ERROR: Arguments are incompatible! | |
| [20]PETSC ERROR: Local size 356 cannot be larger than global size 0! | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [20]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [20]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [20]PETSC ERROR: See docs/index.html for manual pages. | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [20]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [20]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [20]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [20]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [20]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [20]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[20]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [20]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [20]PETSC ERROR: to get more information on the crash. | |
| [20]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [20]PETSC ERROR: Signal received! | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [20]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [20]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [20]PETSC ERROR: See docs/index.html for manual pages. | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [20]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [20]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [20]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic[14]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [14]PETSC ERROR: Arguments are incompatible! | |
| [14]PETSC ERROR: Local size 432 cannot be larger than global size 0! | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [14]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [14]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [14]PETSC ERROR: See docs/index.html for manual pages. | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [14]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [14]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [14]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [14]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [14]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [14]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[14]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [14]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [14]PETSC ERROR: to get more information on the crash. | |
| [14]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [14]PETSC ERROR: Signal received! | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [14]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [14]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [14]PETSC ERROR: See docs/index.html for manual pages. | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [14]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [14]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [14]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [14]PETSC ERROR: ------------------------------------------------------------------------ | |
| [14]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 14 | |
| See docs/faq.html for hints about trouble shooting. | |
| [0]PETSC ERROR: See docs/index.html for manual pages. | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [0]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [0]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [0]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [0]PETSC ERROR: ------------------------------------------------------------------------ | |
| [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 | |
| ugger or -on_error_attach_debugger | |
| [18]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[18]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [18]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [18]PETSC ERROR: to get more information on the crash. | |
| [18]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [18]PETSC ERROR: Signal received! | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [18]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [18]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [18]PETSC ERROR: See docs/index.html for manual pages. | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [18]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [18]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [18]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [18]PETSC ERROR: ------------------------------------------------------------------------ | |
| [18]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 18 | |
| th-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [7]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [7]PETSC ERROR: Try option -start_in_debugger or -on_error=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [20]PETSC ERROR: ------------------------------------------------------------------------ | |
| [20]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 20 | |
| ugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [21]PETSC ERROR: ------------------------------------------------------------------------ | |
| [21]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 21 | |
| _attach_debugger | |
| [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [4]PETSC ERROR: to get more information on the crash. | |
| [4]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [4]PETSC ERROR: Signal received! | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [4]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [4]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [4]PETSC ERROR: See docs/index.html for manual pages. | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [4]PETSC ERROR: Libraries linked from /usr/local/[8]PETSC ERROR: See docs/index.html for manual pages. | |
| [8]PETSC ERROR: ------------------------------------------------------------------------ | |
| [8]PETSC ERROR: test_poisson.py on a diamond named r26i1n2 by aron Thu Oct 24 07:57:00 2013 | |
| [8]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [8]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [8]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [8]PETSC ERROR: ---------------------------------------------------_attach_debugger | |
| [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [7]PETSC ERROR: to get more information on the crash. | |
| [7]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [7]PETSC ERROR: Signal received! | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [7]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [7]PETSC ERROR: See docs/index.html for manual pages. | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: test_poisson.py on a diamond named r25i3n13 by aron Thu Oct 24 07:57:00 2013 | |
| [7]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [7]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [7]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [7]PETSC ERROR: ------------------------------------------------------------------------ | |
| [7]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 7 | |
| u/aron/old/proteus/diamond/lib | |
| [4]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [4]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [4]PETSC ERROR: ------------------------------------------------------------------------ | |
| [4]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 4 | |
| --------------------- | |
| [8]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 8 | |
| [16]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [16]PETSC ERROR: Arguments are incompatible! | |
| [16]PETSC ERROR: Local size 338 cannot be larger than global size 0! | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [16]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [16]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [16]PETSC ERROR: See docs/index.html for manual pages. | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [16]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [16]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [16]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: VecSetSizes() line 1430 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/interface/vector.c | |
| [16]PETSC ERROR: VecCreateGhostWithArray() line 375 in /usr/local/u/aron/old/proteus/externalPackages/petsc-dev/src/vec/vec/impls/mpi/pbvec.c | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range | |
| [16]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger | |
| [16]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[16]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors | |
| [16]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run | |
| [16]PETSC ERROR: to get more information on the crash. | |
| [16]PETSC ERROR: --------------------- Error Message ------------------------------------ | |
| [16]PETSC ERROR: Signal received! | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: Petsc Release Version 3.4.2, unknown | |
| [16]PETSC ERROR: See docs/changes/index.html for recent updates. | |
| [16]PETSC ERROR: See docs/faq.html for hints about trouble shooting. | |
| [16]PETSC ERROR: See docs/index.html for manual pages. | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: test_poisson.py on a diamond named r26i1n3 by aron Thu Oct 24 07:57:00 2013 | |
| [16]PETSC ERROR: Libraries linked from /usr/local/u/aron/old/proteus/diamond/lib | |
| [16]PETSC ERROR: Configure run at Thu Oct 17 17:17:36 2013 | |
| [16]PETSC ERROR: Configure options --with-debugging=0 --with-clanguage=C --with-pic=1 --with-shared-libraries=0 --with-mpi-compilers=1 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-blas-lapack-dir=/opt/intel/cmkl/10.2.4.032 --download-cmake=1 --download-metis=1 --download-parmetis=1 --download-spooles=1 --download-blacs=1 --download-scalapack=1 --download-mumps=1 --download-superlu=1 --download-superlu_dist=1 --download-hypre=1 --PETSC_ARCH=diamond --PETSC_DIR=/usr/local/u/aron/old/proteus/externalPackages/petsc-dev --prefix=/usr/local/u/aron/old/proteus/diamond | |
| [16]PETSC ERROR: ------------------------------------------------------------------------ | |
| [16]PETSC ERROR: User provided function() line 0 in unknown directory unknown file | |
| application called MPI_Abort(MPI_COMM_WORLD, 59) - process 16 | |
| rank 23 in job 1 r25i3n13_33384 caused collective abort of all ranks | |
| exit status of rank 23: killed by signal 9 | |
| rank 15 in job 1 r25i3n13_33384 caused collective abort of all ranks | |
| exit status of rank 15: killed by signal 9 | |
| rank 14 in job 1 r25i3n13_33384 caused collective abort of all ranks | |
| exit status of rank 14: killed by signal 9 | |
| rank 10 in job 1 r25i3n13_33384 caused collective abort of all ranks | |
| exit status of rank 10: killed by signal 9 | |
| rank 8 in job 1 r25i3n13_33384 caused collective abort of all ranks | |
| exit status of rank 8: killed by signal 9 |
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