Created
June 18, 2015 09:07
-
-
Save ajdawson/1254056e540f5a8790dc to your computer and use it in GitHub Desktop.
Notes on concatenation issue
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
{ | |
"metadata": { | |
"name": "", | |
"signature": "sha256:9221e598320abd5d421920f5f48638d6bb36f9a03f5f437d516a11ccd5476f17" | |
}, | |
"nbformat": 3, | |
"nbformat_minor": 0, | |
"worksheets": [ | |
{ | |
"cells": [ | |
{ | |
"cell_type": "code", | |
"collapsed": false, | |
"input": [ | |
"import iris\n", | |
"import iris.coords\n", | |
"import iris.cube\n", | |
"import numpy as np" | |
], | |
"language": "python", | |
"metadata": {}, | |
"outputs": [], | |
"prompt_number": 1 | |
}, | |
{ | |
"cell_type": "markdown", | |
"metadata": {}, | |
"source": [ | |
"Create some dummy data consisting of two cubes, one with a length-2 time dimension and one with a length-1 time dimension. The cubes have matching metadata, as do their coordinates." | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"collapsed": false, | |
"input": [ | |
"time0 = iris.coords.DimCoord([0., 1.], units='days since 2000-01-01', standard_name='time')\n", | |
"time1 = iris.coords.DimCoord([2.], units='days since 2000-01-01', standard_name='time')\n", | |
"\n", | |
"lat = iris.coords.DimCoord([-10., 0., 10.], standard_name='latitude', units='degrees_north')\n", | |
"lon = iris.coords.DimCoord([20., 40., 60., 80.], standard_name='longitude', units='degrees_east')\n", | |
"\n", | |
"cube0 = iris.cube.Cube(np.random.random([2, 3, 4]), standard_name='air_temperature', units='K',\n", | |
" dim_coords_and_dims=[(time0, 0), (lat, 1), (lon, 2)])\n", | |
"cube1 = iris.cube.Cube(np.random.random([1, 3, 4]), standard_name='air_temperature', units='K',\n", | |
" dim_coords_and_dims=[(time1, 0), (lat, 1), (lon, 2)])\n", | |
"\n", | |
"cubes = iris.cube.CubeList([cube0, cube1])\n", | |
"print(cubes)" | |
], | |
"language": "python", | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"output_type": "stream", | |
"stream": "stdout", | |
"text": [ | |
"0: air_temperature / (K) (time: 2; latitude: 3; longitude: 4)\n", | |
"1: air_temperature / (K) (time: 1; latitude: 3; longitude: 4)\n" | |
] | |
} | |
], | |
"prompt_number": 2 | |
}, | |
{ | |
"cell_type": "markdown", | |
"metadata": {}, | |
"source": [ | |
"Attempt to concatenate the cubes, this works..." | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"collapsed": false, | |
"input": [ | |
"cubes.concatenate_cube()" | |
], | |
"language": "python", | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"metadata": {}, | |
"output_type": "pyout", | |
"prompt_number": 3, | |
"text": [ | |
"<iris 'Cube' of air_temperature / (K) (time: 3; latitude: 3; longitude: 4)>" | |
] | |
} | |
], | |
"prompt_number": 3 | |
}, | |
{ | |
"cell_type": "markdown", | |
"metadata": {}, | |
"source": [ | |
"Inspect the `dim_order` attribute, it looks the same as the reported issue, but in this case the concatenation works as expected." | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"collapsed": false, | |
"input": [ | |
"from iris._concatenate import _CoordSignature, _CubeSignature\n", | |
"cube_signatures = [_CubeSignature(cube) for cube in cubes]\n", | |
"coord_signatures = [_CoordSignature(cube_sig) for cube_sig in cube_signatures]\n", | |
"print coord_signatures[0].dim_order\n", | |
"print coord_signatures[1].dim_order" | |
], | |
"language": "python", | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"output_type": "stream", | |
"stream": "stdout", | |
"text": [ | |
"[1, 1, 1]\n", | |
"[0, 1, 1]\n" | |
] | |
} | |
], | |
"prompt_number": 4 | |
} | |
], | |
"metadata": {} | |
} | |
] | |
} |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment