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akolesnikov/hap.py output

Created December 12, 2018 01:24
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hap.py output
[I] Total VCF records: 3775119
[I] Non-reference VCF records: 3775119
[I] Total VCF records: 126929
[I] Non-reference VCF records: 95721
Benchmarking Summary:
Type Filter TRUTH.TOTAL TRUTH.TP TRUTH.FN QUERY.TOTAL QUERY.FP QUERY.UNK FP.gt METRIC.Recall METRIC.Precision METRIC.Frac_NA METRIC.F1_Score TRUTH.TOTAL.TiTv_ratio QUERY.TOTAL.TiTv_ratio TRUTH.TOTAL.het_hom_ratio QUERY.TOTAL.het_hom_ratio
INDEL ALL 10023 9798 225 19035 135 8711 108 0.977552 0.986924 0.457631 0.982215 NaN NaN 1.547658 2.011889
INDEL PASS 10023 9798 225 19035 135 8711 108 0.977552 0.986924 0.457631 0.982215 NaN NaN 1.547658 2.011889
SNP ALL 66237 66174 63 77691 53 11426 11 0.999049 0.999200 0.147070 0.999125 2.284397 2.201343 1.700387 1.778068
SNP PASS 66237 66174 63 77691 53 11426 11 0.999049 0.999200 0.147070 0.999125 2.284397 2.201343 1.700387 1.778068
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