Created
October 5, 2012 17:50
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reading BSMAP ratio files
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| library(methylKit) | |
| obj=read("bsmap_output.txt",sample.id="test",assembly="mm9",header=TRUE, context="CpG", resolution="base", | |
| pipeline=list(fraction=TRUE,chr.col=1,start.col=2,end.col=2, | |
| coverage.col=6,strand.col=3,freqC.col=5 ) | |
| ) | |
| obj |
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