alanhoyle

body() {
    local HEADER_LINES=1
    local COMMAND="sort"

    if [ -t 0 ]; then
        >&2 echo "ERROR:  body requires piped input!"
        >&2 echo ""
    fi

    if [[ -t 0 || "$1" == "-h" || "$1" == "--help" ]] ; then

alanhoyle

// ==UserScript==
// @name         TreasuryDirect Copypasta
// @namespace    https://www.treasurydirect.gov/RS/PW-Display.do
// @version      0.2
// @description  Allow creds to be pasted from a password manager into the TreasuryDirect login form.
// @author       Dennis Stewart (update by Alan Hoyle)
// @license      The Strong Style Public License https://raw.githubusercontent.com/dennisstewart/cvs-checker-py/main/LICENSE
// @match        https://www.treasurydirect.gov/RS/PW-Display.do
// @match        https://treasurydirect.gov/RS/PW-Display.do
// @icon         https://www.google.com/s2/favicons?sz=64&domain=treasurydirect.gov

alanhoyle

temp_file=$(mktemp)

touch -r $1 $temp_file
sed -i '/^.*put something above me.*/i text_to_be_inserted' $1
touch -r $temp_file $1

rm $temp_file

alanhoyle

// ==UserScript==
// @name         etsy same window
// @namespace    http://tampermonkey.net/
// @version      0.1
// @description  stop etsy from opening new tabs for everything
// @author       Alan Hoyle
// @match        https://www.etsy.com/*
// @icon         data:image/gif;base64,R0lGODlhAQABAAAAACH5BAEKAAEALAAAAAABAAEAAAICTAEAOw==
// @grant        none
// ==/UserScript==

alanhoyle

Homebrew build logs for gcc on "CentOS Linux release 7.7.1908 (Core)"
Build date: 2022-01-04 11:14:44

alanhoyle

Homebrew build logs for yafc on "CentOS Linux release 7.7.1908 (Core)"
Build date: 2021-12-17 15:53:28

alanhoyle

# This function attempts to install a provided list of packages.  
# If one of the requested installs fails, it throws an R Error.  By default

# This is a useful function to use in a Dockerfile or command line.  
# You can put run this at a command line with: 

R -e " \  
   install_packages_or_die <- function (pkgs, repos='http://cran.rstudio.com/') { \
       for (l in pkgs) {  install.packages(l, dependencies=TRUE, repos=repos); \
           if ( ! library(l, character.only=TRUE, logical.return=TRUE) ) { \

alanhoyle

# based on https://gist.github.com/ckandoth/5390e3ae4ecf182fa92f6318cfa9fa97

VEP_VER=97
VEP_CACHE=/opt/vep-cache

mkdir -p ${VEP_CACHE}

vep_install -a ap --NO_HTSLIB --NO_TEST --NO_UPDATE -s homo_sapiens -y GRCh38 -c ${VEP_CACHE} --convert --cache_version ${VEP_VER} --PLUGINS LoF

wget https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl -O ${VEP_CACHE}/Plugins/splice_module.pl

alanhoyle

#! /usr/bin/env sh
if [[ "$OSTYPE" == "linux-gnu" ]] ; then 

  if grep -q docker /proc/1/cgroup || test -e /.dockerenv ; then 
      echo DOCKER ; 
  elif grep -q lxc /proc/1/cgroup ; then 
      echo LXC ; 
  elif test -z ${SINGULARITY_CONTAINER+x} ; then 
      echo no_container ; 
  else 

alanhoyle

FROM store/oracle/database-instantclient:12.2.0.1
# I believe one needs to be authenticated to DockerHub to use this image.  

# Oracle Linux is RPM based, and these are the requirements for a basic CPAN install for this
RUN yum install -y \
    gcc \ 
    gzip \
    perl \
    perl-App-cpanminus \
    perl-DBI \