I hereby claim:
- I am alanhoyle on github.
- I am alanh (https://keybase.io/alanh) on keybase.
- I have a public key whose fingerprint is D345 0FE1 43B2 5413 7776 CED4 F40A CD1D 04A4 42B9
To claim this, I am signing this object:
Alan Hoyle alanhoyle
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| FROM store/oracle/database-instantclient:12.2.0.1 | |
| # | |
| RUN yum install -y \ | |
| gcc \ | |
| gzip \ | |
| perl \ | |
| perl-App-cpanminus \ | |
| perl-DBI \ | |
| perl-Test-Simple \ |
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| FROM store/oracle/database-instantclient:12.2.0.1 | |
| # | |
| RUN yum install -y \ | |
| gcc \ | |
| gzip \ | |
| perl \ | |
| perl-App-cpanminus \ | |
| perl-DBI \ | |
| perl-Test-Simple \ |
alanhoyle
/ Dockerfile-oracle-perl
Last active
May 25, 2018 14:36
Dockerfile to build an image for Perl connecting with an Oracle DB via the InstantClient
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| FROM store/oracle/database-instantclient:12.2.0.1 | |
| # I believe one needs to be authenticated to DockerHub to use this image. | |
| # Oracle Linux is RPM based, and these are the requirements for a basic CPAN install for this | |
| RUN yum install -y \ | |
| gcc \ | |
| gzip \ | |
| perl \ | |
| perl-App-cpanminus \ | |
| perl-DBI \ |
alanhoyle
/ container_status.sh
Created
April 12, 2019 21:01
Simple script to check if the current shell is running in a linux container
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| #! /usr/bin/env sh | |
| if [[ "$OSTYPE" == "linux-gnu" ]] ; then | |
| if grep -q docker /proc/1/cgroup || test -e /.dockerenv ; then | |
| echo DOCKER ; | |
| elif grep -q lxc /proc/1/cgroup ; then | |
| echo LXC ; | |
| elif test -z ${SINGULARITY_CONTAINER+x} ; then | |
| echo no_container ; | |
| else |
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| # based on https://gist.github.com/ckandoth/5390e3ae4ecf182fa92f6318cfa9fa97 | |
| VEP_VER=97 | |
| VEP_CACHE=/opt/vep-cache | |
| mkdir -p ${VEP_CACHE} | |
| vep_install -a ap --NO_HTSLIB --NO_TEST --NO_UPDATE -s homo_sapiens -y GRCh38 -c ${VEP_CACHE} --convert --cache_version ${VEP_VER} --PLUGINS LoF | |
| wget https://raw.githubusercontent.com/konradjk/loftee/v0.3-beta/splice_module.pl -O ${VEP_CACHE}/Plugins/splice_module.pl |
alanhoyle
/ install_packages_or_die.R
Created
February 18, 2021 15:30
Install packages or die function for R
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| # This function attempts to install a provided list of packages. | |
| # If one of the requested installs fails, it throws an R Error. By default | |
| # This is a useful function to use in a Dockerfile or command line. | |
| # You can put run this at a command line with: | |
| R -e " \ | |
| install_packages_or_die <- function (pkgs, repos='http://cran.rstudio.com/') { \ | |
| for (l in pkgs) { install.packages(l, dependencies=TRUE, repos=repos); \ | |
| if ( ! library(l, character.only=TRUE, logical.return=TRUE) ) { \ |
alanhoyle
/ # yafc - 2021-12-17_15-53-28.txt
Created
December 17, 2021 21:03
yafc on "CentOS Linux release 7.7.1908 (Core)" - Homebrew build logs
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| Homebrew build logs for yafc on "CentOS Linux release 7.7.1908 (Core)" | |
| Build date: 2021-12-17 15:53:28 |
alanhoyle
/ # gcc - 2022-01-04_11-14-44.txt
Created
January 4, 2022 16:17
gcc on "CentOS Linux release 7.7.1908 (Core)" - Homebrew build logs
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| Homebrew build logs for gcc on "CentOS Linux release 7.7.1908 (Core)" | |
| Build date: 2022-01-04 11:14:44 |
alanhoyle
/ etsy_same_tab.js
Last active
May 9, 2022 14:09
Force etsy links to open in the same tab/window. (Tampermonkey/greasemonkey/etc)
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| // ==UserScript== | |
| // @name etsy same window | |
| // @namespace http://tampermonkey.net/ | |
| // @version 0.1 | |
| // @description stop etsy from opening new tabs for everything | |
| // @author Alan Hoyle | |
| // @match https://www.etsy.com/* | |
| // @icon data:image/gif;base64,R0lGODlhAQABAAAAACH5BAEKAAEALAAAAAABAAEAAAICTAEAOw== | |
| // @grant none | |
| // ==/UserScript== |
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