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December 15, 2015 09:19
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Model fit with residuals
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t.cox2_ph <- coxph(t.surv ~ (Age + PlusSize + PuertoRico + Wins + Highs + Lows + Lipsyncs + CompLeft + | |
Wins*CompLeft + Highs*CompLeft + Lows*CompLeft + Lipsyncs*CompLeft) + cluster(ID), df) | |
t.cox3s <- coxph(t.surv ~ (Age + PlusSize + PuertoRico + Wins + Highs + Lows + LipsyncWithoutOut + CompLeft) + cluster(ID), df) | |
model.df <- data.frame(ID = integer(0), Residuals = double(0), Model = character(0)) | |
model.list <- list(c2 = t.cox2, c2ph = t.cox2_ph, c3 = t.cox3, c3s = t.cox3s) | |
for (i in 1:length(model.list)) { | |
name <- names(model.list[i]) | |
cMod <- model.list[[i]] | |
class <- substr(name, 0, 2) | |
cMod.res <- residuals(cMod, type = "deviance", collapse = df$ID) | |
cMod.df <- data.frame(ID = as.numeric(names(cMod.res)), Residuals = as.numeric(cMod.res), Model = name, Class = class) | |
cMod.mse <- sum( cMod.res^2 ) / length(cMod.res) | |
model.df <- rbind(model.df, cMod.df) | |
print(cMod.mse) | |
} | |
p <- ggplot(model.df, aes(ID, Residuals, color = factor(Model) )) | |
p <- p + geom_point() + geom_smooth( fill = NA ) | |
p <- p + geom_vline( xintercept = c(9.5, 21.5, 34.5), linetype = 3 ) | |
p <- p + geom_hline( yintercept = 0, alpha = 0.5 ) | |
p <- p + scale_color_discrete("Model") |
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