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alimanfoo / .gitignore
Last active December 27, 2015 13:39
Slices with step > 1 are slow in h5py.
.ipynb_checkpoints
*.hdf5
*~
*.py
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alimanfoo / em_spike.ipynb
Created February 12, 2014 13:48
Playing with expectation maximisation for haplotype frequencies.
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.ipynb_checkpoints
*~
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alimanfoo / .gitignore
Last active October 21, 2015 03:13
Benchmarking of HDF5 and BLZ for genotype data.
.ipynb_checkpoints
hdd
ssd
ram
data
blzbug
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@alimanfoo
alimanfoo / spike-joint-sfs-benchmark.ipynb
Created December 23, 2014 12:07
spike-joint-sfs-benchmark
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@alimanfoo
alimanfoo / bcolz_ctable_addcol.ipynb
Last active August 29, 2015 14:16
addcol is broken for persistent ctable
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alimanfoo / pysamstats_example.ipynb
Last active August 29, 2015 14:22
pysamstats example
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alimanfoo / dask.ipynb
Last active August 29, 2015 14:22
dask issues
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