get_dbgap_data.sh

## prjna612365

for i in SRR11635884 SRR11635885 SRR11635886 SRR11635887 SRR11635888 SRR11635889 SRR11635890 SRR11635891 SRR11635892 SRR11635893 SRR11635894 SRR11635895 SRR11635896 SRR11635897 SRR11635898 SRR11635899 SRR11635900 SRR11635901 SRR11635902 SRR11635903 SRR11635904 SRR11635905 SRR11635906 SRR11635907 SRR11635908 SRR11635909 SRR11635910 SRR11635911 SRR11635912 SRR11635913 SRR11635914 SRR11635915 SRR11635916 SRR11635917 SRR11635918 SRR11635919 SRR11635920 SRR11635921 SRR11635922 SRR11635923 SRR11635924 SRR11635925 SRR11635926 SRR11635927 SRR11635928 SRR11635929 SRR11635930 SRR11635931 SRR11635932 SRR11635933 SRR11635934 SRR11635935 SRR11635936 SRR11635937 SRR11635938 SRR11635939 SRR11635940 SRR11635941 SRR11635942 SRR11635943 SRR11635944 SRR11635945 SRR11635946 SRR11635947 SRR11635948 SRR11635949 SRR11635950 SRR11635951 SRR11635952 SRR11635953 SRR11635954 SRR11635955 SRR11635956 SRR11635957 SRR11635958 SRR11635959 SRR11635960 SRR11635961 SRR11635962 SRR11635963 SRR11635964 SRR11635965 SRR11635966 SRR11635967 SRR11635968 SRR11635969 SRR11635970 SRR11635971 SRR11635972 SRR11635973 SRR11635974 SRR11635975 SRR11635976 SRR11635977 SRR11635978 SRR11635979 SRR11635980 SRR11635981 SRR11635982 SRR11635983 SRR11635984 SRR11635985 SRR11635986 SRR11635987 SRR11635988 SRR11635989 SRR11635990 SRR11635991 SRR11635992 SRR11635993 SRR11635994 SRR11635995 SRR11635996 SRR11635997 SRR11635998 SRR11635999 SRR11636000 SRR11636001 SRR11636002 SRR11636003 SRR11636004 SRR11636005 SRR11636006 SRR11636007 SRR11636008 SRR11636009 SRR11636010 SRR11636011 SRR11636012 SRR11636013 SRR11636014 SRR11636015 SRR11636016 SRR11636017 SRR11636018 SRR11636019 SRR11636020 SRR11636021 SRR11636022 SRR11636023 SRR11636024 SRR11636025 SRR11636026 SRR11636027 SRR11636028 SRR11636029 SRR11636030 SRR11636031 SRR11636032 SRR11636033 SRR11636034 SRR11636035 SRR11636036 SRR11636037 SRR11636038 SRR11636039 SRR11636040 SRR11636041 SRR11636042 SRR11636043 SRR11636044 SRR11636045 SRR11636046 SRR11636047 SRR11636048 SRR11636049 SRR11636050 SRR11636051 SRR11636052 SRR11636053 SRR11636054 SRR11636055 SRR11636056 SRR11636057 SRR11636058 SRR11636059 SRR11636060 SRR11636061 SRR11636062 SRR11636063 SRR11636064 SRR11636065 SRR11636066 SRR11636067 SRR11636068 SRR11636069 SRR11636070 SRR11636071 SRR11636072 SRR11636073 SRR11636074 SRR11636075 SRR11636076 SRR11636077 SRR11636078 SRR11636079 SRR11636080 SRR11636081 SRR11636082 SRR11636083 SRR11636084 SRR11636085 SRR11636086 SRR11636087 SRR11636088 SRR11636089 SRR11636090 SRR11636091 SRR11636092 SRR11636093 SRR11636094 SRR11636095 SRR11636096 SRR11636097 SRR11636098 SRR11636099 SRR11636100 SRR11636101 SRR11636102 SRR11636103 SRR11636104 SRR11636105 SRR11636106 SRR11636107 SRR11636108 SRR11636109 SRR11636110 SRR11636111 SRR11636112 SRR11636113 SRR11636114 SRR11636115 SRR11636116 SRR11636117 SRR11636118 SRR11636119 SRR11636120 SRR11636121 SRR11636122 SRR11636123 SRR11636124 SRR11636125 SRR11636126 SRR11636127 SRR11636128 SRR11636129 SRR11636130 SRR11636131 SRR11636132 SRR11636133 SRR11636134 SRR11636135 SRR11636136 SRR11636137 SRR11636138 SRR11636139 SRR11636140 SRR11636141 SRR11636142 SRR11636143 SRR11636144 SRR11636145 SRR11636146 SRR11636147 SRR11636148 SRR11636149 SRR11636150 SRR11636151 SRR11636152 SRR11636153 SRR11636154 SRR11636155 SRR11636156 SRR11636157 SRR11636158 SRR11636159 SRR11636160 SRR11636161 SRR11636162 SRR11636163 SRR11636164 SRR11636165 SRR11819970 SRR11819971 SRR11819972 SRR11819973 SRR11819974 SRR11819975 SRR11819976 SRR11819977 SRR11820193 SRR11820194 SRR11820195 SRR11820196 SRR11820197 SRR11820198 SRR11820199 SRR11820200 SRR11820201 SRR11820202 SRR11820203 SRR11820204 SRR11820828 SRR11820829 SRR11820830 SRR11820831 SRR11820832 SRR11820833 SRR11820834 SRR11820835 SRR11820836 SRR11820837 SRR11820838 SRR11820839 SRR11820840 SRR11820841 SRR11820842 SRR11820843 SRR11820844 SRR11820845 SRR11820846 SRR11820848 SRR11820850 SRR11820852 SRR11820854 SRR11820856 SRR11820858 SRR11820860 SRR11820862 SRR11820864 SRR11820866 SRR11820868 SRR11820870 SRR11820872 SRR11820874 SRR11820876 SRR11820878 SRR11820880 SRR11820882 SRR11820884 SRR11820886 SRR11820888 SRR11820890 SRR11820892 SRR11820893 SRR11820895 SRR11820897 SRR11820899 SRR11820901 SRR11820903 SRR11820905 SRR11820907 SRR11820909 SRR11820911 SRR11820912 SRR11820913 SRR11820914 SRR11820915 SRR11820916 SRR11820917 SRR11820918 SRR11820919 SRR11820920 SRR11820921 SRR11820922 SRR11820923 SRR11820924 SRR11820925 SRR11820926 SRR11820927 SRR11820928 SRR11820929 SRR11820933 SRR11820934 SRR11820935 SRR11820936 SRR11820937 SRR11820938 SRR11820939 SRR11820940 SRR11820941 SRR11820942 SRR11820943 SRR11820944 SRR11820945 SRR11820946 SRR11820947 SRR11820948 SRR11820949 SRR11820950 SRR11820951 SRR11820952 SRR11820953 SRR11820954 SRR11820955 SRR11820956 SRR11820957 SRR11820958 SRR11820959 SRR11820960 SRR11820961 SRR11820962 SRR11820963 SRR11820964 SRR11820965 SRR11820966 SRR11820967 SRR11820968 SRR11820969 SRR11820970 SRR11820971 SRR11820972 SRR11820973 SRR11820974 SRR11820975 SRR11820976 SRR11820977 SRR11820978 SRR11820979 SRR11820980 SRR11820981 SRR11820982 SRR11820983 SRR11820984 SRR11820985 SRR11820986
do prefetch --ngc prj_32422.ngc $i
done

for i in SRR11635884 SRR11635885 SRR11635886 SRR11635887 SRR11635888 SRR11635889 SRR11635890 SRR11635891 SRR11635892 SRR11635893 SRR11635894 SRR11635895 SRR11635896 SRR11635897 SRR11635898 SRR11635899 SRR11635900 SRR11635901 SRR11635902 SRR11635903 SRR11635904 SRR11635905 SRR11635906 SRR11635907 SRR11635908 SRR11635909 SRR11635910 SRR11635911 SRR11635912 SRR11635913 SRR11635914 SRR11635915 SRR11635916 SRR11635917 SRR11635918 SRR11635919 SRR11635920 SRR11635921 SRR11635922 SRR11635923 SRR11635924 SRR11635925 SRR11635926 SRR11635927 SRR11635928 SRR11635929 SRR11635930 SRR11635931 SRR11635932 SRR11635933 SRR11635934 SRR11635935 SRR11635936 SRR11635937 SRR11635938 SRR11635939 SRR11635940 SRR11635941 SRR11635942 SRR11635943 SRR11635944 SRR11635945 SRR11635946 SRR11635947 SRR11635948 SRR11635949 SRR11635950 SRR11635951 SRR11635952 SRR11635953 SRR11635954 SRR11635955 SRR11635956 SRR11635957 SRR11635958 SRR11635959 SRR11635960 SRR11635961 SRR11635962 SRR11635963 SRR11635964 SRR11635965 SRR11635966 SRR11635967 SRR11635968 SRR11635969 SRR11635970 SRR11635971 SRR11635972 SRR11635973 SRR11635974 SRR11635975 SRR11635976 SRR11635977 SRR11635978 SRR11635979 SRR11635980 SRR11635981 SRR11635982 SRR11635983 SRR11635984 SRR11635985 SRR11635986 SRR11635987 SRR11635988 SRR11635989 SRR11635990 SRR11635991 SRR11635992 SRR11635993 SRR11635994 SRR11635995 SRR11635996 SRR11635997 SRR11635998 SRR11635999 SRR11636000 SRR11636001 SRR11636002 SRR11636003 SRR11636004 SRR11636005 SRR11636006 SRR11636007 SRR11636008 SRR11636009 SRR11636010 SRR11636011 SRR11636012 SRR11636013 SRR11636014 SRR11636015 SRR11636016 SRR11636017 SRR11636018 SRR11636019 SRR11636020 SRR11636021 SRR11636022 SRR11636023 SRR11636024 SRR11636025 SRR11636026 SRR11636027 SRR11636028 SRR11636029 SRR11636030 SRR11636031 SRR11636032 SRR11636033 SRR11636034 SRR11636035 SRR11636036 SRR11636037 SRR11636038 SRR11636039 SRR11636040 SRR11636041 SRR11636042 SRR11636043 SRR11636044 SRR11636045 SRR11636046 SRR11636047 SRR11636048 SRR11636049 SRR11636050 SRR11636051 SRR11636052 SRR11636053 SRR11636054 SRR11636055 SRR11636056 SRR11636057 SRR11636058 SRR11636059 SRR11636060 SRR11636061 SRR11636062 SRR11636063 SRR11636064 SRR11636065 SRR11636066 SRR11636067 SRR11636068 SRR11636069 SRR11636070 SRR11636071 SRR11636072 SRR11636073 SRR11636074 SRR11636075 SRR11636076 SRR11636077 SRR11636078 SRR11636079 SRR11636080 SRR11636081 SRR11636082 SRR11636083 SRR11636084 SRR11636085 SRR11636086 SRR11636087 SRR11636088 SRR11636089 SRR11636090 SRR11636091 SRR11636092 SRR11636093 SRR11636094 SRR11636095 SRR11636096 SRR11636097 SRR11636098 SRR11636099 SRR11636100 SRR11636101 SRR11636102 SRR11636103 SRR11636104 SRR11636105 SRR11636106 SRR11636107 SRR11636108 SRR11636109 SRR11636110 SRR11636111 SRR11636112 SRR11636113 SRR11636114 SRR11636115 SRR11636116 SRR11636117 SRR11636118 SRR11636119 SRR11636120 SRR11636121 SRR11636122 SRR11636123 SRR11636124 SRR11636125 SRR11636126 SRR11636127 SRR11636128 SRR11636129 SRR11636130 SRR11636131 SRR11636132 SRR11636133 SRR11636134 SRR11636135 SRR11636136 SRR11636137 SRR11636138 SRR11636139 SRR11636140 SRR11636141 SRR11636142 SRR11636143 SRR11636144 SRR11636145 SRR11636146 SRR11636147 SRR11636148 SRR11636149 SRR11636150 SRR11636151 SRR11636152 SRR11636153 SRR11636154 SRR11636155 SRR11636156 SRR11636157 SRR11636158 SRR11636159 SRR11636160 SRR11636161 SRR11636162 SRR11636163 SRR11636164 SRR11636165 SRR11819970 SRR11819971 SRR11819972 SRR11819973 SRR11819974 SRR11819975 SRR11819976 SRR11819977 SRR11820193 SRR11820194 SRR11820195 SRR11820196 SRR11820197 SRR11820198 SRR11820199 SRR11820200 SRR11820201 SRR11820202 SRR11820203 SRR11820204 SRR11820828 SRR11820829 SRR11820830 SRR11820831 SRR11820832 SRR11820833 SRR11820834 SRR11820835 SRR11820836 SRR11820837 SRR11820838 SRR11820839 SRR11820840 SRR11820841 SRR11820842 SRR11820843 SRR11820844 SRR11820845 SRR11820846 SRR11820848 SRR11820850 SRR11820852 SRR11820854 SRR11820856 SRR11820858 SRR11820860 SRR11820862 SRR11820864 SRR11820866 SRR11820868 SRR11820870 SRR11820872 SRR11820874 SRR11820876 SRR11820878 SRR11820880 SRR11820882 SRR11820884 SRR11820886 SRR11820888 SRR11820890 SRR11820892 SRR11820893 SRR11820895 SRR11820897 SRR11820899 SRR11820901 SRR11820903 SRR11820905 SRR11820907 SRR11820909 SRR11820911 SRR11820912 SRR11820913 SRR11820914 SRR11820915 SRR11820916 SRR11820917 SRR11820918 SRR11820919 SRR11820920 SRR11820921 SRR11820922 SRR11820923 SRR11820924 SRR11820925 SRR11820926 SRR11820927 SRR11820928 SRR11820929 SRR11820933 SRR11820934 SRR11820935 SRR11820936 SRR11820937 SRR11820938 SRR11820939 SRR11820940 SRR11820941 SRR11820942 SRR11820943 SRR11820944 SRR11820945 SRR11820946 SRR11820947 SRR11820948 SRR11820949 SRR11820950 SRR11820951 SRR11820952 SRR11820953 SRR11820954 SRR11820955 SRR11820956 SRR11820957 SRR11820958 SRR11820959 SRR11820960 SRR11820961 SRR11820962 SRR11820963 SRR11820964 SRR11820965 SRR11820966 SRR11820967 SRR11820968 SRR11820969 SRR11820970 SRR11820971 SRR11820972 SRR11820973 SRR11820974 SRR11820975 SRR11820976 SRR11820977 SRR11820978 SRR11820979 SRR11820980 SRR11820981 SRR11820982 SRR11820983 SRR11820984 SRR11820985 SRR11820986
do fasterq-dump --ngc prj_32422.ngc $i
synapse store ${i}_1.fastq --parentId syn53975001
synapse store ${i}_2.fastq --parentId syn53975001
rm ${i}_1.fastq ${i}_2.fastq
done

## prjna393485

for i in SRR11820930 SRR11820931 SRR11820932 SRR6000387 SRR6000388 SRR6000389 SRR6000390 SRR6000391 SRR6000392 SRR6000393 SRR6000394 SRR6000395 SRR6000396 SRR6000397 SRR6000398 SRR6000399 SRR6000400 SRR6000401 SRR6000402 SRR6000403 SRR6000404 SRR6000405 SRR6000406 SRR6000407 SRR6000408 SRR6000409 SRR6000410 SRR6000411 SRR6000412 SRR6000413 SRR6000414 SRR6000415 SRR6000416 SRR6000417 SRR6000418 SRR6000419 SRR6000420 SRR6000421 SRR6000422 SRR6000423 SRR6000424 SRR6000425 SRR6000426 SRR6000427 SRR6000428 SRR6000429 SRR6000430
do prefetch --ngc prj_32422.ngc $i
done

for i in SRR11820930 SRR11820931 SRR11820932 SRR6000387 SRR6000388 SRR6000389 SRR6000390 SRR6000391 SRR6000392 SRR6000393 SRR6000394 SRR6000395 SRR6000396 SRR6000397 SRR6000398 SRR6000399 SRR6000400 SRR6000401 SRR6000402 SRR6000403 SRR6000404 SRR6000405 SRR6000406 SRR6000407 SRR6000408 SRR6000409 SRR6000410 SRR6000411 SRR6000412 SRR6000413 SRR6000414 SRR6000415 SRR6000416 SRR6000417 SRR6000418 SRR6000419 SRR6000420 SRR6000421 SRR6000422 SRR6000423 SRR6000424 SRR6000425 SRR6000426 SRR6000427 SRR6000428 SRR6000429 SRR6000430
do fasterq-dump --ngc prj_32422.ngc $i
synapse store ${i}_1.fastq --parentId syn53975003
synapse store ${i}_2.fastq --parentId syn53975003
rm ${i}_1.fastq ${i}_2.fastq
done


##prjna259583

for i in SRR1577672 SRR1577673 SRR1577674 SRR1577675 SRR1577676 SRR1577677 SRR1577678 SRR1577679 SRR1577680 SRR1577681 SRR1577682 SRR1577683 SRR1577684 SRR1577685 SRR1577686 SRR1577687 SRR1577688 SRR1577689 SRR1577690 SRR1577691 SRR1577692 SRR1577693 SRR1577694 SRR1577695 SRR1577696 SRR1577697 SRR1577698 SRR1577699 SRR1577700 SRR1577701 SRR1577702 SRR1577703 SRR1577704 SRR1577705 SRR1577706 SRR1577707 SRR1577708 SRR1577709 SRR1577710 SRR1577711 SRR1577712 SRR1577713 SRR1577714 SRR1577715 SRR1577716 SRR1577717
do prefetch --ngc prj_32422.ngc $i
done

for i in SRR1577672 SRR1577673 SRR1577674 SRR1577675 SRR1577676 SRR1577677 SRR1577678 SRR1577679 SRR1577680 SRR1577681 SRR1577682 SRR1577683 SRR1577684 SRR1577685 SRR1577686 SRR1577687 SRR1577688 SRR1577689 SRR1577690 SRR1577691 SRR1577692 SRR1577693 SRR1577694 SRR1577695 SRR1577696 SRR1577697 SRR1577698 SRR1577699 SRR1577700 SRR1577701 SRR1577702 SRR1577703 SRR1577704 SRR1577705 SRR1577706 SRR1577707 SRR1577708 SRR1577709 SRR1577710 SRR1577711 SRR1577712 SRR1577713 SRR1577714 SRR1577715 SRR1577716 SRR1577717
do fasterq-dump --ngc prj_32422.ngc $i
synapse store ${i}_1.fastq --parentId syn53975005
synapse store ${i}_2.fastq --parentId syn53975005
rm ${i}_1.fastq ${i}_2.fastq
done